Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6788 113 6e-20 >seq6788 Length=68851 Score = 113 bits (124), Expect = 6e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 77354 TGATCCATTATATGTTTCATAAGGTCC-TTCTGTTTCAGCTAGTTCACAACTCGCTTCCA 77412 |||||| | |||||||||||| || || | || || || || ||||| || ||||||| Sbjct 49100 TGATCCCTCATATGTTTCATAGGGGCCATACTCCTT-GGCGAGGTCACAGCTTGCTTCCA 49158 Query 77413 ATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTAT 77472 |||||||||||||| ||||| || |||| |||||| || || ||||| || | Sbjct 49159 GGGCTCCGTAATAAATAGTTTCAAAGATCTGCTTATTCAGCAACTGGGCTTCTGGGCTCT 49218 Query 77473 CAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAG 77532 |||| ||||| | | ||| || |||||||||| || || || ||||| ||||||| Sbjct 49219 CAAAGGGATACCTCATCAAAATGAAAGCATCTGCTAGGCCTTGTACCCCAATTCCAATAG 49278 Query 77533 GTCTATGTCTCTTATTGGA 77551 | | ||| | ||||| || Sbjct 49279 GCCGATGGCGTTTATTTGA 49297 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| ||||| || || |||||| || |||| || || ||||| || | Sbjct 43241 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCAATATGTATGT 43300 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| ||||||||||||||||| ||||| ||||| ||||| || | || |||| Sbjct 43301 TTAGAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTCT 43360 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| |||||||| | ||| || | | || || | ||||| |||| Sbjct 43361 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 43411 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| | ||||||||||| ||| Sbjct 59101 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACCTCTCAGAAAGTAGGTTG 59160 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| || | || || || || ||||| || || | || | ||||| | Sbjct 59161 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATGCCCACAGACACCCTCATCAGC 59220 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 59221 ATATGCTGTGGTCTTTCAGCC 59241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694071445615520