Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6788 118 2e-21 seq847 102 1e-16 >seq6788 Length=68851 Score = 118 bits (130), Expect = 2e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || |||||||| ||||| ||||| |||||||| || ||||| || || ||||| | ||| Sbjct 46068 TGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTAGTGTAAGGTTCAATGGAT 46127 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| || ||||||||||||||||| ||||| || || | | |||||| Sbjct 46128 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 46187 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 46188 TTTCTTATACCAT 46200 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| ||||| || || |||||| || | || || || ||||| || | Sbjct 43241 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCAATATGTATGT 43300 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| ||||||||||||||||| ||||| ||||| ||||| || | || |||| Sbjct 43301 TTAGAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTCT 43360 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| |||||||| | ||| || | | || || | ||||| |||| Sbjct 43361 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 43411 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | |||||||| ||||| || ||||| | ||||||||||| ||| Sbjct 59101 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACCTCTCAGAAAGTAGGTTG 59160 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| | || || ||||| || ||||| || |||| || | ||||| | Sbjct 59161 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATGCCCACAGACACCCTCATCAGC 59220 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 59221 ATATGCTGTGGTCTTTC 59237 Score = 100 bits (110), Expect = 4e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 75949 TGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAA 76008 |||||| | ||||||||| || | || | || | || || || || || || || | Sbjct 49100 TGATCCCTCATATGTTTCATAGGGGCCATACTCCTTGGCGAGGTCACAGCTTGCTTCCAG 49159 Query 76009 CGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATC 76068 || ||||||||||| ||||| || |||| |||||| || || ||||| | || || Sbjct 49160 GGCTCCGTAATAAATAGTTTCAAAGATCTGCTTATTCAGCAACTGGGCTTCTGGGCTCTC 49219 Query 76069 AAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGG 76128 ||| ||||| | | ||| || ||||||||||| || || || ||||| |||||||| Sbjct 49220 AAAGGGATACCTCATCAAAATGAAAGCATCTGCTAGGCCTTGTACCCCAATTCCAATAGG 49279 Query 76129 TCTATGTCTCTTATTGGA 76146 | ||| | ||||| || Sbjct 49280 CCGATGGCGTTTATTTGA 49297 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 76511 TATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACAC 76570 |||||| |||||||| ||||||||||| ||||||| ||| ||||| ||||| |||||| Sbjct 51755 TATAACTTCTCAAATTCCTCTCCCCAAACTTCATCCAGACCGGGACACTCATTTGGACAC 51814 Query 76571 ATCAATGACCACTC 76584 |||| |||||| || Sbjct 51815 ATCAGTGACCAGTC 51828 >seq847 Length=614715 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 ||||||| || || || | || || ||||| || || |||||||| || || | ||| | Sbjct 68524 CTTCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCT 68583 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || || |||||||| ||||| || ||||||||||| || || | Sbjct 68584 TTAGCCAGAATATAGCAGCAAACGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 68643 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 68644 CCACCACTCTTTCCCC 68659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712321338797760