Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq245 131 4e-25 seq5258 123 6e-23 seq1743 111 4e-19 seq806 105 2e-17 seq470 105 2e-17 seq584 104 5e-17 seq186 102 2e-16 seq1044 89.7 1e-12 seq4084 87.8 4e-12 SEQ11613 86.0 1e-11 >seq245 Length=1203420 Score = 131 bits (144), Expect = 4e-25 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| || || || || ||||| || |||||||||||||| | | || Sbjct 1786 CCTCAGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGT 1845 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || ||||| ||||| |||||||||||||||| | ||| || Sbjct 1846 GCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATGCC 1905 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCA 152060 |||||| || || || || || || |||| | | ||| ||| ||| | || || Sbjct 1906 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTC-CACCTCCA 1964 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCTT 152113 || || || || |||||||| || ||||||||||||| |||||||| |||| Sbjct 1965 AG-GTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATTTTGACCTT 2016 Score = 93.3 bits (102), Expect = 1e-13 Identities = 136/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | || | |||||||| || || ||||| ||||| Sbjct 1592 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATC 1651 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 |||||||||||||| | | || |||||||| || || || || || || |||| Sbjct 1652 AGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCA 1711 Query 152037 ACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACG 152093 | | |||| ||| ||| || || | || || || ||||| || || ||||||||| Sbjct 1712 ATGGTGTC---ACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 1768 Query 152094 AAGACCTGCAT 152104 |||| |||||| Sbjct 1769 AAGATCTGCAT 1779 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| || || || || ||||| || |||||||||||||| | | || Sbjct 1225 CCTCAGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGT 1284 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || ||||| ||||| |||||||||||||| | | || || Sbjct 1285 GCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATACC 1344 Query 152003 TTCCTTTTCTTGAATTTT 152020 |||||| || || || || Sbjct 1345 TTCCTTGTCCTGGATCTT 1362 >seq5258 Length=100039 Score = 123 bits (136), Expect = 6e-23 Identities = 163/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | ||||||||||| |||||||| ||||| |||||||| || | ||||| | Sbjct 772 GAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACG 831 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| || || ||||| || |||||||| || | | |||||| Sbjct 832 GCCATCTTCCAGCTGCTTT--CCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCT 889 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || || ||| | |||| |||| || || || || || Sbjct 890 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGC 949 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || | || || ||||| || |||||||| |||| |||||| || Sbjct 950 GTGACGGTCTTTCCCGTCAGGGTCTTCACAAAGATCTGCATCTT 993 >seq1743 Length=339712 Score = 111 bits (122), Expect = 4e-19 Identities = 160/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | ||||||||||| |||||||| ||||| |||||||| || | ||||| Sbjct 2361 GAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATG 2302 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||||||||| ||||| || || ||||| || |||||||| || | | |||||| Sbjct 2301 GCCATCTTCTAGCTGCTTT--CCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCT 2244 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || || | | | |||| |||| || || || || || Sbjct 2243 TCCTTATCCTGGATCTTGGCCTTTATATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGC 2184 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || | || || |||||||| || | |||||| || Sbjct 2183 GTGATGGTCTTCCTGGTCAGGGTCTTCACAAAAATCTGCATCTT 2140 >seq806 Length=630265 Score = 105 bits (116), Expect = 2e-17 Identities = 159/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | ||||||||||| || ||||| || || |||||||| || | ||||| | Sbjct 94754 GAGTCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACG 94813 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| || || ||||| || |||||||| || | | |||||| Sbjct 94814 GCCATCTTCCAGCTGCTTT--CCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCT 94871 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || || ||| | |||| ||||||| || | | || Sbjct 94872 TCCTTATCCTGGATCTTGGCCTTAACATTTTCTATAGTGTCTGAGGGTTCAGCCTTGAGC 94931 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || || ||||| || |||||||| || | |||||| || Sbjct 94932 ATGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCTT 94975 >seq470 Length=855345 Score = 105 bits (116), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | ||||||||||| || ||||| |||| |||||||| || | ||||| | Sbjct 695603 AGTCTCAACACAAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTACGA 695662 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || | ||||| ||||||||||| || | | ||||||||| Sbjct 695663 CCATCTTCCAGCTGCTTACCAGGAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 695722 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || |||| | |||||| | |||| |||| | || || || | | Sbjct 695723 TTATCCTGAAGCCTGGACTTGACATTTTCTATAGTGTCCAACGGTTCAACCTCGGGCTCA 695782 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || |||||||| |||||||| |||| |||||| || Sbjct 695783 ATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCATCTT 695823 >seq584 Length=770825 Score = 104 bits (114), Expect = 5e-17 Identities = 139/192 (72%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | || | |||||||| || || || || ||||| Sbjct 448349 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATC 448408 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 |||||||||||||| | | ||| |||||||| || || || ||| |||||| |||| Sbjct 448409 AGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCA 448468 Query 152037 ACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACG 152093 | | |||| ||| ||| || || || || || ||||| || || | || |||||| Sbjct 448469 ATGGTGTC---ACTGGGCTCGACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACG 448525 Query 152094 AAGACCTGCATT 152105 |||| ||||||| Sbjct 448526 AAGATCTGCATT 448537 >seq186 Length=1368741 Score = 102 bits (112), Expect = 2e-16 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | ||||||||||| | ||||| || || |||||||| || | ||||| | Sbjct 837445 GAGTCTCAACACAAGATGAAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACG 837386 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||||| || |||| || |||||||| || | | |||||| Sbjct 837385 GCCATCTTCCAGCTGCTTTTCA--GCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCT 837328 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || || ||| | |||| |||| || || | || || Sbjct 837327 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAGCCTCGAGC 837268 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||| || |||||||| || | |||||| || Sbjct 837267 GTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCTT 837224 >seq1044 Length=525964 Score = 89.7 bits (98), Expect = 1e-12 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | ||||||||||| || ||||| ||||| |||||||| || | ||||| | Sbjct 400042 GAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACG 399983 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || ||||| || ||||| || |||||||| || | | || ||||| Sbjct 399982 GCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATCCCTTC 399923 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| | || || || || ||| | |||| |||| | || | | || || Sbjct 399922 CTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTGTCCCAGGGTTCAGCCTTGAGTGT 399863 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || || ||||| || | |||||| || Sbjct 399862 GATGGTCTTCCCTGTAAGGGTTTTCACAAAAATCTGCATCTT 399821 >seq4084 Length=139134 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 9/229 (4%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | ||||||||||| | ||||| || || |||||||| || | ||||| | Sbjct 21895 GAGTCTCAACACAAGATGAAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACG 21954 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| || || |||| || |||||||| || | | |||||| Sbjct 21955 GCCATCTTCCAGCTGCTTT--CCAGCAGAGATCAGTCTCTGCTGATCAGGAGGCATTCCT 22012 Query 152004 TC-----CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTT 152058 || ||| || || || || || ||| | |||| |||| || || || | Sbjct 22013 TCTGGATCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCT 22072 Query 152059 CAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || || || || ||| | || |||||||| || | |||||| || Sbjct 22073 CGAGCGTGATGGTCTTCCCCTTAAGGGTCTTCACAAAAATCTGCATCTT 22121 >SEQ11613 Length=25137 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/183 (71%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTG 151984 |||| || | ||||| | |||||||| || ||||| || || ||||| || ||||| Sbjct 17202 TGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTT--CCAGCAAAGATCAGTCTCTG 17259 Query 151985 CTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044 ||| || | | ||||||||||| || || || || || ||| | |||| |||| Sbjct 17260 CTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTC 17319 Query 152045 TGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || || ||||| || |||||||| |||| |||||| Sbjct 17320 CGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAGATCTGCAT 17379 Query 152105 TTT 152107 || Sbjct 17380 CTT 17382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152803810448103