Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq245 150 1e-31 seq5258 145 5e-30 seq1743 129 4e-25 seq806 127 1e-24 seq186 127 1e-24 seq4084 118 8e-22 seq1868 118 8e-22 seq1044 118 8e-22 seq470 118 8e-22 SEQ11613 113 3e-20 seq8342 100 2e-16 seq584 95.1 9e-15 SEQ15051 84.2 2e-11 >seq245 Length=1203420 Score = 150 bits (166), Expect = 1e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | |||||||| || || |||||| |||||||||||||| Sbjct 1777 CATCCCACCCCTCAGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATC 1836 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| ||||||||||| | | |||||| || | Sbjct 1837 AGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGG 1896 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| |||| | |||| | |||||||| || | Sbjct 1897 TGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCACTGGGCT 1955 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| ||||| ||||||||||||||||||||||| Sbjct 1956 CCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 2007 Score = 127 bits (140), Expect = 1e-24 Identities = 143/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 44150 TTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 || ||||||||||| |||| || ||| | || ||||||||||| |||||||||||| Sbjct 1592 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATC 1651 Query 44210 AAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-C 44268 | | |||||| || | || | ||||||||| ||| ||||| |||| | |||| | Sbjct 1652 AGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTC 1710 Query 44269 TATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328 |||||||| || || ||||||| || || ||||| || || |||||||||||||| Sbjct 1711 AATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAA 1770 Query 44329 GATTTGCAT 44337 ||| ||||| Sbjct 1771 GATCTGCAT 1779 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | |||||||| || || |||||| |||||||||||||| Sbjct 1216 CATGCCACCCCTCAGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATC 1275 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| ||||||||||| | | |||||| || | Sbjct 1276 AGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGG 1335 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTT 44253 || | ||||||||| ||| ||||| Sbjct 1336 GGGAATACCTTCCTTGTCCTGGATCTT 1362 >seq5258 Length=100039 Score = 145 bits (160), Expect = 5e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| || ||||||||| |||||||| || | | || Sbjct 773 AGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGG 832 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || |||||||||| | ||||||||| | ||| | |||||| Sbjct 833 CCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCC 892 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| ||||| | || ||| ||||| | ||| Sbjct 893 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 952 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||||||| ||||||||||| ||||| ||||| Sbjct 953 ACGGTCTTTCCCGTCAGGGTCTTCACAAAGATCTGCAT 990 >seq1743 Length=339712 Score = 129 bits (142), Expect = 4e-25 Identities = 163/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GT-TGG 44176 ||||||||||| || ||||| || ||||||||| |||||||| || | | || ||| Sbjct 2360 AGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGG 2301 Query 44177 CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCT 44236 | | || || |||||||| || |||||||||| | ||||||||| | ||| | ||| Sbjct 2300 C---CATCTTCTAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCT 2244 Query 44237 TCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACC 44296 ||||| ||| ||||| ||| | || |||| ||||| | || ||| ||||| | | Sbjct 2243 TCCTTATCCTGGATCTTGGCCTTTATATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGC 2184 Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| | || ||||||||||| || || ||||| Sbjct 2183 GTGATGGTCTTCCTGGTCAGGGTCTTCACAAAAATCTGCAT 2143 >seq806 Length=630265 Score = 127 bits (140), Expect = 1e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| |||||| || |||||||| || | | || Sbjct 94755 AGTCTCAACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGG 94814 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || |||||||||| | ||||||||| | ||| | |||||| Sbjct 94815 CCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCC 94874 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| ||||| | || ||| ||| | | | Sbjct 94875 TTATCCTGGATCTTGGCCTTAACATTTTCTATAGTGTCTGAGGGTTCAGCCTTGAGCATG 94934 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| ||||||||||| || || ||||| Sbjct 94935 ATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 94972 >seq186 Length=1368741 Score = 127 bits (140), Expect = 1e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| | | |||||| || |||||||| || | | || Sbjct 837444 AGTCTCAACACAAGATGAAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGG 837385 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| | ||| |||||| | ||||||||| | ||| | |||||| Sbjct 837384 CCATCTTCCAGCTGCTTTTCAGCAGAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCC 837325 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| ||||| | |||||| |||| | ||| Sbjct 837324 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGATTCAGCCTCGAGCGTG 837265 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| ||||||||||| || || ||||| Sbjct 837264 ATGGTCTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 837227 >seq4084 Length=139134 Score = 118 bits (130), Expect = 8e-22 Identities = 160/223 (72%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| | | |||||| || |||||||| || | | || Sbjct 21896 AGTCTCAACACAAGATGAAGGGAGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGG 21955 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC- 44238 | || ||||||||||| || ||| |||||| | ||||||||| | ||||| ||||| Sbjct 21956 CCATCTTCCAGCTGCTTTCCAGCAGAGATCAGTCTCTGCTGATCAGGAGGCATTCCTTCT 22015 Query 44239 ----CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCA 44294 ||| ||| ||||| ||| | || |||| ||||| | || ||| ||||| | Sbjct 22016 GGATCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGA 22075 Query 44295 CCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || ||||| ||| | ||||||||||| || || ||||| Sbjct 22076 GCGTGATGGTCTTCCCCTTAAGGGTCTTCACAAAAATCTGCAT 22118 >seq1868 Length=317776 Score = 118 bits (130), Expect = 8e-22 Identities = 159/221 (72%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||| | || || ||||| |||||||| || | | || Sbjct 104810 AGTCTCAACACAAGATGAGGGATGGATTCGTTTTGAATGTTGTAGTCAGACAAAGTACGG 104869 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || |||||||||||||| |||||||||| | ||||||||| | ||| | |||| | Sbjct 104870 CCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTAC 104929 Query 44240 TTTTCCGTTATCTTCT---GCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACC 44296 || ||| ||||| | ||| | || |||| || || | || ||| ||||| | | Sbjct 104930 TTATCCTGGATCTTGTTGGCCTTTACATTTTCTATAGTCTCTGAGGGTTCAACCTCGAGC 104989 Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| ||||| ||||||||||| || || ||||| Sbjct 104990 GTGATGGTCTTCCCCGTAAGGGTCTTCACAAAAATATGCAT 105030 >seq1044 Length=525964 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| ||||||||| |||||||| || | | || Sbjct 400041 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGG 399982 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || |||||||||||||| |||||||||| | ||||||||| | ||| | |||||| Sbjct 399981 CCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATCCCTTCC 399922 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || | | ||||| ||| | || |||| ||||| || ||| ||| | || Sbjct 399921 TTATTCTGGATCTTGGCCTTTACATTTTCTATTGTGTCCCAGGGTTCAGCCTTGAGTGTG 399862 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| || || ||||| ||||| || || ||||| Sbjct 399861 ATGGTCTTCCCTGTAAGGGTTTTCACAAAAATCTGCAT 399824 >seq470 Length=855345 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| |||| |||| |||||||| || | | || Sbjct 695603 AGTCTCAACACAAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTACGA 695662 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || | |||||||| | ||||||||| | ||| | |||||| Sbjct 695663 CCATCTTCCAGCTGCTTACCAGGAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 695722 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| | | | ||| | || |||| ||||| | ||| ||||| | | Sbjct 695723 TTATCCTGAAGCCTGGACTTGACATTTTCTATAGTGTCCAACGGTTCAACCTCGGGCTCA 695782 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||||||||||||||| ||||| ||||| Sbjct 695783 ATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCAT 695820 >SEQ11613 Length=25137 Score = 113 bits (124), Expect = 3e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || ||||||||||| || |||||||||| | ||||||||| | ||| | |||||||| Sbjct 17225 TCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTA 17284 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 ||| ||||| ||| | || |||| ||||| | || ||| ||||| | || || Sbjct 17285 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGAGTGATG 17344 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| ||||||||||| ||||| ||||| Sbjct 17345 GTCTTCCCCGTCAGGGTCTTCACAAAGATCTGCAT 17379 >seq8342 Length=48445 Score = 100 bits (110), Expect = 2e-16 Identities = 145/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| || ||||| ||| |||||||| |||||||| || | || || Sbjct 15304 AGTCTCAACACAAGATGAAGGGTGTGCTCCTTTTAAATGTTGTAGTCA---AATTACAGC 15248 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || ||||||| || | |||||||| ||||| | |||||| Sbjct 15247 TA-TCTTCCAGCTGCTTACCAGCAAAGAGCAGCCTCTGCTGATTAGAAGGAATTCCTTCC 15189 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || || | || || | ||| ||||||| || Sbjct 15188 TTATCCTGGATCTTGGCCTTTACATTTTCTCTAGTATCCAAGTTTTCAACCTCCAGTGTG 15129 Query 44300 ATCGTCTTTCCCGTGAGGGTCTT 44322 || ||||| || || |||||||| Sbjct 15128 ATGGTCTTCCCTGTAAGGGTCTT 15106 >seq584 Length=770825 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 44150 TTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 || ||||||||||| |||| || ||| | || ||||||||||| || ||||||||| Sbjct 448349 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATC 448408 Query 44210 AAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-C 44268 | | |||||| || | || | |||||||| ||| ||||| ||| | | ||| | Sbjct 448409 AGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTT-TGCCTTGACATTCTC 448467 Query 44269 TATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328 |||||||| || || ||||| | || || || || || || | ||| |||||||| Sbjct 448468 AATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAA 448527 Query 44329 GATTTGCAT 44337 ||| ||||| Sbjct 448528 GATCTGCAT 448536 >SEQ15051 Length=11622 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTT-GG 44176 ||||||||||| || ||||| ||| || | |||| |||||||| || | | || || Sbjct 5699 AGTCTCAACACAAGATGAAGGGTGGACTTCCTTTGAATGTTGTAGTCAGACAAAGTACGG 5640 Query 44177 CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCT 44236 || | || ||||||||| || ||||| | || | ||||||||| | ||| | ||| Sbjct 5639 CGATATTC---CAGCTGCTTACCAGCAAAAAACAGCCCCTGCTGATCAGGAGGAATTCCT 5583 Query 44237 TCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTC 44292 ||||| ||| | ||||| ||| | || ||||| |||| | || ||| ||||| Sbjct 5582 TCCTTATCCTTGATCTTAACCTTTACGTTTTCTATGATGTCTGAGGGTTCAACCTC 5527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359688578761281