Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq490 165 1e-35 SEQ48808 125 1e-23 >seq490 Length=842669 Score = 165 bits (182), Expect = 1e-35 Identities = 208/286 (73%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| || || | |||| ||||| ||||| | || | |||| |||| Sbjct 613952 AAGGGACAGCCCTTCACATTATTGCAGATGAGAGATTGAATTGAGGCAGTGTTGATGATC 613893 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || || | ||||| || || ||||| |||||||||||| || ||||||||| Sbjct 613892 TTAAAGCCTGCTTCTCCTCCAAACGTGCTTGGCTTCCAGTACTGAGGAGAGCAGATGGGA 613833 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || || | || | ||| |||| |||||| Sbjct 613832 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCGAAG 613773 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 ||||||| ||||| ||||||||||||| | | | |||||||||| || |||| | Sbjct 613772 ATGGCGTCTGGACGAGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCGATG 613713 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | ||| ||||| | || ||||| || || ||||| ||||||| Sbjct 613712 TCACTGTAGAGGGCTTTCAGCTCGGCGGCCATTTCCTTCTCTCCTG 613667 Score = 118 bits (130), Expect = 2e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9254 TGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACA 9313 |||||||||||| ||||||| ||| || || || || || || || || || |||| Sbjct 612428 TGGTCTGGAACAACCGCTCGTCCTCCCACTCGGGGTGCTCCTGCTTGAGCACGTCACACA 612369 Query 9314 CCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAA 9373 | | |||||| |||| |||||||| || ||||||||||| || || || |||||||| | Sbjct 612368 CTCGGTTGTGCTCCCGCAGCCAGATTGTAGCGTACATCATCAGACCCGGCACCAGGCCGA 612309 Query 9374 AAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGT 9433 | | || || || ||||| | |||| || || || | | ||| || |||||||| | Sbjct 612308 AGACTTCCTGGCCCACAGCGAACCGCAGGTGCTCAGGGATGTGGGGCGGGTAGATCATCT 612249 Query 9434 GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTGA 9486 |||| |||| | || | ||| || |||| || || || || | |||| Sbjct 612248 CGGCCTGCGTGTCTCTCACGGTGGGAGGGTACACCTCTCCATCGATGAGCTGA 612196 >SEQ48808 Length=1625 Score = 125 bits (138), Expect = 1e-23 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 8387 CTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAAC 8446 ||||| ||||||||| |||| || |||||| || ||| |||||| |||||||| ||| Sbjct 1625 CTGGGTTTCCAGTACTCCGGCGAACAGATGGGATTTCCCAGGAGGCCCTTGAGGGAAAAC 1566 Query 8447 GGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACC 8506 |||||||| | ||| | || ||||| || ||||||| |||||| || |||||||| Sbjct 1565 GGAGCCCCAATCTCTATCATACTCTCCCCAAAGATGGAGTTGGGCTGGCACTTTTCCAGG 1506 Query 8507 AAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCA 8566 | | || | ||| | ||||| ||| |||| ||| ||||| | || | || ||| Sbjct 1505 AGCAGCCCCGGGTAGAACTCCAAAGCATCGATGTCGCCGTACATCTCCTGTAACTCCGCA 1446 Query 8567 GCGATCTCCTTTTCTCCTG 8585 || ||||||| ||||||| Sbjct 1445 GCCATCTCCTCCTCTCCTG 1427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716260348678720