Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq245 161 2e-34 seq584 134 3e-26 seq309 102 2e-16 seq2265 86.0 2e-11 >seq245 Length=1203420 Score = 161 bits (178), Expect = 2e-34 Identities = 171/223 (77%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 177909 AAGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAG 177968 ||||| ||||||| |||| |||||||| || || || || || || |||||| | ||| Sbjct 2016 AAGGTCAAAATGC---AAATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCTTGGAG 1960 Query 177969 GTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAA 178026 ||||| || ||| ||||||| |||||||| || ||||| |||||||| ||||| | Sbjct 1959 GTGGA--GCCCAGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCA 1902 Query 178027 TCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTC 178086 |||| ||||||||||| | || ||||| ||||| || ||||| |||||||| | || | Sbjct 1901 TCCCACCGGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCC 1842 Query 178087 TTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || | ||||| ||| |||| || || || || ||||| || || Sbjct 1841 TTTCTGATTACAACATCCAGAAGGAGTCGACCCTGCACCTGGT 1799 >seq584 Length=770825 Score = 134 bits (148), Expect = 3e-26 Identities = 143/187 (76%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||||||||| | || || ||||| |||||||| ||||| | ||| || | Sbjct 448533 CAGATCTTCGTGAAAACCTTAACTGGTAAAACCATCACCCTAGAGGTCG--AGCCCAGTG 448476 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| |||||| |||||||| ||||| ||||| || ||||||| Sbjct 448475 ACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGC 448416 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 448415 AGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 448356 Query 178102 TCCAAAA 178108 |||| || Sbjct 448355 TCCAGAA 448349 >seq309 Length=1089319 Score = 102 bits (112), Expect = 2e-16 Identities = 115/152 (76%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 177956 GATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAG 178013 ||||||| | |||||||| || ||| ||||||| ||||| || || ||||| ||| Sbjct 175317 GATCACCTTGGAGGTGGA--GCCCAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAG 175260 Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 || || |||| ||||| | ||||||||| | | | ||| |||||||||||||| ||| Sbjct 175259 GATAAGGAAGATATCCCACTGGACCAGCAGAGGCCCAGCTTTGCCGGAAAACAGCTGGAA 175200 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCA 178105 ||||| | || ||| | ||||| ||| |||| Sbjct 175199 GATGGCCGCACCCTTTCTGATTACAACATCCA 175168 >seq2265 Length=264906 Score = 86.0 bits (94), Expect = 2e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177957 ATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGAC 178016 ||||| || |||| ||| | |||||||||||||| ||||| ||||| | ||| Sbjct 262440 ATCACTCTTGAGGACGAACCCAGTGACACCATCGAGAATGTCAAGGCCAAGATCAAAGAC 262381 Query 178017 AAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGAT 178076 || ||||| ||||| || |||||||| | || || ||||| || || ||||| || ||| Sbjct 262380 AAGGAAGGCATCCCACCCGACCAGCAGAGGCTGATATTCGCTGGCAAGCAGCTGGAGGAT 262321 Query 178077 GGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 || | || | |||| || || |||| ||||| Sbjct 262320 GGCCGCACCCAGTCCGACTACAATATCCAGAAAGA 262286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202670218906842