Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq245 131 2e-25 seq584 109 5e-19 seq2265 93.3 4e-14 seq806 84.2 2e-11 seq181 84.2 2e-11 >seq245 Length=1203420 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||||| || || || |||||||| | || || Sbjct 1799 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCC 1858 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || || || | ||| ||||||| || | || ||||||||| | Sbjct 1859 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGG 1918 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | ||||| || | ||||||||||| || || || || Sbjct 1919 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTG 1978 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| ||||| ||||| || ||||| || Sbjct 1979 CCCGTCAGGGTCTTCACGAAGATTTGCATTTT 2010 Score = 123 bits (136), Expect = 2e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| ||||| |||||||| |||||||| | || || |||||||||||||| || ||| Sbjct 1592 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATC 1651 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 || | ||| ||||| | ||||| | ||||||||| ||| || ||||| | Sbjct 1652 AGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCA 1711 Query 41795 ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854 | ||||| || | ||| ||||||| || || || || || ||||| ||||| ||||| Sbjct 1712 ATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAG 1771 Query 41855 ATCTGCAT 41862 |||||||| Sbjct 1772 ATCTGCAT 1779 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||||| || || || |||||||| | || || Sbjct 1238 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCC 1297 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || || || | ||| ||||| | ||||| | ||||||||| | Sbjct 1298 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGG 1357 Query 41774 ATTTT 41778 || || Sbjct 1358 ATCTT 1362 >seq584 Length=770825 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| ||||| |||||||| |||||||| | || || ||||||||||| || || ||| Sbjct 448349 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATC 448408 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 || | ||| ||||| | ||| | || ||||||||| ||| ||| ||| | | Sbjct 448409 AGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCA 448468 Query 41795 ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854 | ||||| || | ||| ||||| | || || |||||||| || | || || ||||| Sbjct 448469 ATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAAG 448528 Query 41855 ATCTGCAT 41862 |||||||| Sbjct 448529 ATCTGCAT 448536 >seq2265 Length=264906 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||||| || |||| ||||| || || |||||||| ||||||| | || || Sbjct 262267 CACCAAGTGCAGGATGGTCTCTTTCTGGATATTGTAGTCGGACTGGGTGCGGCCATCCTC 262326 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||| ||||||||||| | ||| ||||| | || | || |||||||| | Sbjct 262327 CAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTT 262386 Query 41773 GATTTT 41778 ||| || Sbjct 262387 GATCTT 262392 >seq806 Length=630265 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||| ||||| || ||| ||||||||||||||| ||||| || | || || | || Sbjct 94761 AACACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGGCCATCT 94820 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || |||||||| || || || ||||| | ||| || || | |||| | ||||| ||| Sbjct 94821 TCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 94880 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| || ||| ||| | | |||||| | || ||| | | | || || Sbjct 94881 TGGATCTTGGCCTT-AACATTTTCTATAGTGTCTGAGGGTTCAGCCTTGAGCATGATGGT 94939 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCG 41869 || ||||| || ||||| || ||||||||||| || ||| Sbjct 94940 CTTCCCCGTAAGGGTCTTCACAAAAATCTGCATCTTGTCG 94979 >seq181 Length=1381130 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| ||| || ||||| || || ||||| || ||||||||| Sbjct 683457 AGGCGCAGCACCAGGTGCAGGGTGGGCTTTTTCTGGATATTGTAGTCAGACAGGGTGCGC 683516 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 | || || ||||||||||| ||| ||||||| | ||| ||||| Sbjct 683517 CCATCCTCCAGCTGCTTGCCAGCGGATATCAGCCTCTGCTGGTC 683560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461906459011600