Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq228 408 3e-109 seq4 351 7e-92 seq33 134 1e-26 >seq228 Length=1691671 Score = 408 bits (452), Expect = 3e-109 Identities = 433/570 (76%), Gaps = 7/570 (1%) Strand=Plus/Plus Query 3963 TTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTG 4022 ||| | ||| | ||| ||||||| ||||||||||| ||||| |||| ||| || || || Sbjct 1401382 TTTCTGTTAGTCTTTCCTCTCATAGACTTCAAATTTATACTTGATACCTTTTTCCTCCTG 1401441 Query 4023 CACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTC 4082 || | |||||| || | ||| || ||| | |||||| |||||||| | ||||| ||| Sbjct 1401442 AACTTCAGAAAGGACCCCTGGGTACTCTGGAAGAAGTTTATATTTCTCCAAATCAATTTC 1401501 Query 4083 TGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATC 4142 ||| | || |||||| |||||| || ||||||||||| |||||||| ||| | ||| Sbjct 1401502 TGGGAGGAACATGTCACTTTCAAATTCCTGCATGATCCTTGTCACAAAGAGTCTT-GATG 1401560 Query 4143 GCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTC 4202 |||||| | | |||| ||||| || || |||||||| ||||||| |||||| ||||||| Sbjct 1401561 GCATGGCTGATTCATGGCTTCCTTGTAAACAGAACTGCCTCCAACTATCCAAACCATGTT 1401620 Query 4203 TACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGC 4262 ||||| | |||||| ||||| ||||| |||||||||| ||||| || | ||| || || Sbjct 1401621 CACTTTGTCTGCTAACTCTGGTTGTTCAATAAGTTTTAAGGCATCGTCCAGACTTTTGGC 1401680 Query 4263 TAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCT 4322 | ||||||||||| ||||| |||||||| || || |||||||||| | ||||||||| Sbjct 1401681 AAGAAAATGAGCTCCTTGTGGCAGCTCCTTGAGCTCTGTGCTGAGAACTATATTAATTCT 1401740 Query 4323 GCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCAC 4382 | | |||||||| || |||||||||| ||| |||||||| ||||| ||||||||||| Sbjct 1401741 GTCCTTTAAAGGTCGATTCTTCTCAGAAATGGAGAACCAGGTCTTCCATCCCATAATCAC 1401800 Query 4383 TAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATC 4442 | ||||||||| || || || || | ||||||||||||||| | || || || Sbjct 1401801 CAGGTTCTGTTTACCT------GAGGAGGTGGCAGTCATTCTTTGGAAGTACTTGAATTC 1401854 Query 4443 ATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTAC 4502 ||| || ||||| |||| || || | |||||||||||||| || || || Sbjct 1401855 GTTCCAGAGCAGAGGCCAGGGCAGGTCTCCGTTCTTGCCAATGCCCATATTCTGCAACAC 1401914 Query 4503 AGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 || || |||||||| || | | |||||| Sbjct 1401915 GGCGACGATGCAGTTCAGCGGTCAAACCAT 1401944 >seq4 Length=37932696 Score = 351 bits (388), Expect = 7e-92 Identities = 391/522 (75%), Gaps = 0/522 (0%) Strand=Plus/Plus Query 4011 TTTCTCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTC 4070 ||| || || || || | |||||| || | |||||| ||| | ||||||| ||||| | Sbjct 3415343 TTTTTCCTCCTGGACTTCAGAAAGGACCCCTGGATACTCTGGGAGAAGTTTGCATTTCCC 3415402 Query 4071 TAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAA 4130 | ||||| |||||| || || ||||||| |||||| || ||||||||||| |||||||| Sbjct 3415403 CAAATCAATTTCTGGGAAGAACGTGTCACTTTCAAATTCCTGCATGATCCTTGTCACAAA 3415462 Query 4131 CAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTAT 4190 ||| | |||| || ||| | | |||| ||||| || || |||||||| ||||||| ||| Sbjct 3415463 GAGTCTGAGATGGCCTGGCTGATTCATGGCTTCCTTGTAGACAGAACTGCCTCCAACTAT 3415522 Query 4191 CCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATC 4250 ||| |||||||| |||||| |||||| ||||| ||||| |||||||||| ||||||| Sbjct 3415523 CCAAACCATGTCCACTTTACCTGCTAACTCTGGTTGTTCAATAAGTTTTAAGCCATCATC 3415582 Query 4251 TAAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAAC 4310 | ||| || || | |||||||||| | ||| ||||||| || || | |||||||| Sbjct 3415583 CAGACTTTTGGCAAGAAAATGAGCTGCTTATGGTGGCTCCTTGAGCTCTCTACTGAGAAC 3415642 Query 4311 AACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTT 4370 | |||||||||| | |||||||||| ||||||| ||||| ||||| || || || Sbjct 3415643 TATATTAATTCTGTCCTTTAAAGGCCCACTCTTCTCGGGAATGGAGAAGCAGGTTTTCCA 3415702 Query 4371 ACCCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAA 4430 ||||||||||| | ||||||||| ||| || || || || || |||||||||||||| Sbjct 3415703 GCCCATAATCACCAGGTTCTGTTTACCTGCCACTGAGGAGGTGGTGGTCATTCTTTGGAA 3415762 Query 4431 ATGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCAT 4490 | || | | ||| | || ||||| |||| || | | |||| |||||||| Sbjct 3415763 GTACTTGCATCCGTTCCTGAGCAGAGGCCAGGGCAGGTCTCGGTCCTTGCAGATGCCCAT 3415822 Query 4491 GTTTTGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 || || | ||||| || ||| |||| || | | |||||| Sbjct 3415823 ATTCTGGGACACAGCGACGATGTAGTTCAGAGATCAAACCAT 3415864 Score = 111 bits (122), Expect = 1e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 || || |||||||| ||||||| |||||| | |||||| ||||||| |||||| ||||| Sbjct 21104480 TTGTAAACAGAACTGCCTCCAACTATCCAAATCATGTCCACTTTATCTGCTAAGTCTGGT 21104539 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 ||||| |||| ||||| ||||| || | ||| || || | ||||||||||| ||||| Sbjct 21104540 TGTTCAATAAGCTTTAAGGCATCGTCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGG 21104598 Score = 107 bits (118), Expect = 1e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||||| | ||||| |||||| || || ||||||| |||||| || ||||| Sbjct 21101489 AAGTTTATATTTCTCCATATCAATTTCTGGGAAGAACGTGTCACTTTCAAATTCCTGCAT 21101548 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| | |||| || ||| | | |||| ||||| || | ||| | Sbjct 21101549 GATCCTTGTCACAAAGAGTCTGAGATGGCCTGGCTGATTCATGGCTTCCTTTAAAACAAA 21101608 Query 4176 AC 4177 || Sbjct 21101609 AC 21101610 Score = 98.7 bits (108), Expect = 7e-16 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || | |||||||| | |||||||||| | |||||||| || ||||||||||| Sbjct 21118493 CTTGAGCTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 21118552 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || || ||||||||||| | ||||||||| || Sbjct 21118553 AATGGAGAACCAGGTTTTCCGTCCCATAATCACCAGGTTCTGTTTACCT 21118601 >seq33 Length=18013292 Score = 134 bits (148), Expect = 1e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 26936 TTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTT 26995 |||| | || | | | ||||||| | |||||| |||||||| || ||| |||||||| Sbjct 2805439 TTAGGCCACGTGGCGGACAATGGAGGAAACGCAGGTGCAGCCCACGCCCACCAGCATCTT 2805498 Query 26996 CTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTG 27055 || | || || || ||||||| | | || | | |||| || || |||||||| Sbjct 2805499 TTCCATCCGGAAGGAGACAGGGCAGTTCTCAGGCTCCCTCCGCAGGACCAGGATCTCTTG 2805558 Query 27056 TTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAA 27115 ||||| | || ||||||||||||| ||| | || || |||| || || || | Sbjct 2805559 CTGGATGAGAACAGAGTTCATGTGGTGGTCCAACTTTCCCTCAGAGTTGACGCAGCGCTG 2805618 Query 27116 GTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||| |||| ||| ||||| |||||||||||||||||||| |||| |||||||| Sbjct 2805619 GTGGCGGCACTGTGCCTCCCAGATCACAGAGGGATATCTATCAGGATCCTCATTGCG 2805675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361156611340484