Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq126 260 2e-64 seq68 129 7e-25 seq95 118 1e-21 >seq126 Length=6434747 Score = 260 bits (288), Expect = 2e-64 Identities = 593/883 (67%), Gaps = 13/883 (1%) Strand=Plus/Minus Query 176373 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 176432 || ||||| || |||| | ||||||| || | || ||| | || |||||| ||| Sbjct 167775 CTGGTGTTCATCATTGGCCTCCTGGGCAACATGGTGGTTGTGTTGATCCTCATAAAGTAC 167716 Query 176433 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 176492 | |||| | ||| | ||||| || | || | ||||||||| | |||||| |||| Sbjct 167715 AGGAAGCTTCAAATTATGACTAATATCTACCTCCTCAACTTGGCAGTTTCTGACCTGCTC 167656 Query 176493 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 176552 ||||| || || | ||||| ||||| |||||| || ||| |||| |||| |||| Sbjct 167655 TTTCTCTTCACCGTTCCATTCTGGATTCACTATGTT---ATGCGGAATGAATGGAGTTTT 167599 Query 176553 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 176612 || | | |||||||||| ||| || | | |||| | | ||||||| || || Sbjct 167598 GGCCATCACATGTGTAAACTAATCACTGGGTTTTATTACCTTGCCTTGTACAGTGAGATC 167539 Query 176613 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCT 176672 |||| |||||||||||| ||| | |||||||| || || ||||| ||||||| |||| Sbjct 167538 TTTTTCATCATCCTGCTGACAATTGACAGGTACCTGGCCATTGTCCATGCTGTGTTTGCT 167479 Query 176673 TTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCA 176732 | || | || || || | || || | ||| | | || ||| |||||| Sbjct 167478 CTTAGAGCCCGGACTGTGACGTTTGCTATCATCACCAGCATCATCACTTGGGGACTGGCA 167419 Query 176733 GGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATG--GTAGGG 176790 |||||| | | ||||||||| |||| |||| |||| | | | | | Sbjct 167418 GGGTTGGCAGCATTGCCTGAATTTATCTTCCATGAGTCCCAAAACATCTTCGGAGAACAT 167359 Query 176791 TTCAGTGTGATCCTTACTACCCAGA-GATGTCTACAAATGTTTGGAGGCGCGCCCACGTT 176849 ||| |||| |||| | || ||||| |||| | | | |||| ||| ||| | | Sbjct 167358 TTC--TGTGGTCCTCATTATCCAGAGGATGAAGA-AGACAGCTGGAAGCGTTTCCATGCT 167302 Query 176850 GCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTAT 176909 | ||| ||| || |||| | | ||||| |||||||||| ||||||||| Sbjct 167301 CTGAGAATGAATATCTTTGGTCTAGCTCTCCCTCTACTCATTATGGTCATCTGCTACTCA 167242 Query 176910 GTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTC 176969 | ||| || | || ||| |||| |||||| || || ||| |||||||||| |||| Sbjct 167241 GGAATCATTAAAACTCTGCTGAGATGCCCCAATAAAAAAAAGCACAAGGCCATTCGGCTT 167182 Query 176970 ATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTA 177029 || ||||| ||||| | | || |||| |||||||||| || |||||| | |||||||| Sbjct 167181 ATTTTTGTTGTCATGATAGTCTTTTTTATTTTTTGGACCCCATACAACCTGGTTCTCCTT 167122 Query 177030 CTGTCTACCTTTCAC-GCAACCCTTCTTAACCTGCAG-TGTGCATTGAGCAGTAACTTGG 177087 || ||| | |||||| ||| | || || ||| ||| | ||||| || ||| Sbjct 167121 CTCTCTGCTTTTCACAGCA--CATTTTTGGAGAACAGCTGTCAACAGAGCAAACACCTGG 167064 Query 177088 ACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGA 177147 || |||| ||| | | || | | ||||| || ||||| || |||||||||| | Sbjct 167063 ACCTGGCCATGCAGGTGACCGAGGTGATTGCCTATACCCACTGCTGTGTCAACCCAGTCA 167004 Query 177148 TCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACG 177207 | || || || || || || | ||| | | ||||||| | ||| ||||||| | | Sbjct 167003 TTTATGCCTTTGTTGGCGAAAGGTTCCGGAAACACCTGCGGCTCTTTTTCCACAGACATG 166944 Query 177208 TGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 177250 |||| |||||||| | || || || || ||||| ||||||| Sbjct 166943 TGGCAATCTACCTGGGGAAATATATTCCATTCCTTCCTGGTGA 166901 Score = 260 bits (288), Expect = 2e-64 Identities = 593/883 (67%), Gaps = 13/883 (1%) Strand=Plus/Minus Query 9487 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 9546 || ||||| || |||| | ||||||| || | || ||| | || |||||| ||| Sbjct 167775 CTGGTGTTCATCATTGGCCTCCTGGGCAACATGGTGGTTGTGTTGATCCTCATAAAGTAC 167716 Query 9547 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 9606 | |||| | ||| | ||||| || | || | ||||||||| | |||||| |||| Sbjct 167715 AGGAAGCTTCAAATTATGACTAATATCTACCTCCTCAACTTGGCAGTTTCTGACCTGCTC 167656 Query 9607 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 9666 ||||| || || | ||||| ||||| |||||| || ||| |||| |||| |||| Sbjct 167655 TTTCTCTTCACCGTTCCATTCTGGATTCACTATGTT---ATGCGGAATGAATGGAGTTTT 167599 Query 9667 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 9726 || | | |||||||||| ||| || | | |||| | | ||||||| || || Sbjct 167598 GGCCATCACATGTGTAAACTAATCACTGGGTTTTATTACCTTGCCTTGTACAGTGAGATC 167539 Query 9727 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCT 9786 |||| |||||||||||| ||| | |||||||| || || ||||| ||||||| |||| Sbjct 167538 TTTTTCATCATCCTGCTGACAATTGACAGGTACCTGGCCATTGTCCATGCTGTGTTTGCT 167479 Query 9787 TTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCA 9846 | || | || || || | || || | ||| | | || ||| |||||| Sbjct 167478 CTTAGAGCCCGGACTGTGACGTTTGCTATCATCACCAGCATCATCACTTGGGGACTGGCA 167419 Query 9847 GGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATG--GTAGGG 9904 |||||| | | ||||||||| |||| |||| |||| | | | | | Sbjct 167418 GGGTTGGCAGCATTGCCTGAATTTATCTTCCATGAGTCCCAAAACATCTTCGGAGAACAT 167359 Query 9905 TTCAGTGTGATCCTTACTACCCAGA-GATGTCTACAAATGTTTGGAGGCGCGCCCACGTT 9963 ||| |||| |||| | || ||||| |||| | | | |||| ||| ||| | | Sbjct 167358 TTC--TGTGGTCCTCATTATCCAGAGGATGAAGA-AGACAGCTGGAAGCGTTTCCATGCT 167302 Query 9964 GCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTAT 10023 | ||| ||| || |||| | | ||||| |||||||||| ||||||||| Sbjct 167301 CTGAGAATGAATATCTTTGGTCTAGCTCTCCCTCTACTCATTATGGTCATCTGCTACTCA 167242 Query 10024 GTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTC 10083 | ||| || | || ||| |||| |||||| || || ||| |||||||||| |||| Sbjct 167241 GGAATCATTAAAACTCTGCTGAGATGCCCCAATAAAAAAAAGCACAAGGCCATTCGGCTT 167182 Query 10084 ATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTA 10143 || ||||| ||||| | | || |||| |||||||||| || |||||| | |||||||| Sbjct 167181 ATTTTTGTTGTCATGATAGTCTTTTTTATTTTTTGGACCCCATACAACCTGGTTCTCCTT 167122 Query 10144 CTGTCTACCTTTCAC-GCAACCCTTCTTAACCTGCAG-TGTGCATTGAGCAGTAACTTGG 10201 || ||| | |||||| ||| | || || ||| ||| | ||||| || ||| Sbjct 167121 CTCTCTGCTTTTCACAGCA--CATTTTTGGAGAACAGCTGTCAACAGAGCAAACACCTGG 167064 Query 10202 ACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGA 10261 || |||| ||| | | || | | ||||| || ||||| || |||||||||| | Sbjct 167063 ACCTGGCCATGCAGGTGACCGAGGTGATTGCCTATACCCACTGCTGTGTCAACCCAGTCA 167004 Query 10262 TCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACG 10321 | || || || || || || | ||| | | ||||||| | ||| ||||||| | | Sbjct 167003 TTTATGCCTTTGTTGGCGAAAGGTTCCGGAAACACCTGCGGCTCTTTTTCCACAGACATG 166944 Query 10322 TGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 10364 |||| |||||||| | || || || || ||||| ||||||| Sbjct 166943 TGGCAATCTACCTGGGGAAATATATTCCATTCCTTCCTGGTGA 166901 Score = 109 bits (120), Expect = 6e-19 Identities = 167/235 (71%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 176943 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 177002 ||||||| | ||| ||| | ||||||||||||| ||||||| | | ||| ||| | || Sbjct 101516 AAGAAGAGGCACAGGGCTGTGAGGCTCATCTTTGCCATCATGATTGTCTACTTTATCTTC 101457 Query 177003 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCTG 177062 ||||| |||||||||||||||||| | ||| ||||| || | || ||| | ||| Sbjct 101456 TGGACTCCCTACAACATTGTTCTCTTCCTGAACACCTTCCA-GGAATTCTTGGGA--CTG 101400 Query 177063 -----CAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAG 177117 | ||||| | | || | |||| ||| ||| ||| | | ||| |||| | | Sbjct 101399 AGTAACTGTGTGACT--ACCAATCACTTAGACCAGGCCATGCAGGTGACAGAAACTCTTG 101342 Query 177118 CCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTT 177172 |||||||| ||||||||||| | |||||||| || || || |||||||| Sbjct 101341 GAATGACACACTGCTGCATCAACCCTATCATCTACGCCTTTGTTGGAGAGAAGTT 101287 Score = 109 bits (120), Expect = 6e-19 Identities = 167/235 (71%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 10057 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 10116 ||||||| | ||| ||| | ||||||||||||| ||||||| | | ||| ||| | || Sbjct 101516 AAGAAGAGGCACAGGGCTGTGAGGCTCATCTTTGCCATCATGATTGTCTACTTTATCTTC 101457 Query 10117 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACCTG 10176 ||||| |||||||||||||||||| | ||| ||||| || | || ||| | ||| Sbjct 101456 TGGACTCCCTACAACATTGTTCTCTTCCTGAACACCTTCCA-GGAATTCTTGGGA--CTG 101400 Query 10177 -----CAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAG 10231 | ||||| | | || | |||| ||| ||| ||| | | ||| |||| | | Sbjct 101399 AGTAACTGTGTGACT--ACCAATCACTTAGACCAGGCCATGCAGGTGACAGAAACTCTTG 101342 Query 10232 CCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTT 10286 |||||||| ||||||||||| | |||||||| || || || |||||||| Sbjct 101341 GAATGACACACTGCTGCATCAACCCTATCATCTACGCCTTTGTTGGAGAGAAGTT 101287 Score = 89.7 bits (98), Expect = 6e-13 Identities = 163/236 (69%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 176943 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 177002 ||||||| | ||| ||| | ||||||||||||| ||||||| | | ||| ||| | || Sbjct 89786 AAGAAGAGGCACAGGGCTGTGAGGCTCATCTTTGCCATCATGATTGTCTACTTTATCTTC 89727 Query 177003 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTT---CTTA-- 177057 ||||| |||||||||||||| || || ||| ||||| || | | | || || | Sbjct 89726 TGGACTCCCTACAACATTGTCCTTCTCCTGATGACCTTCCAGGAATTCTTTGGGCTGAAT 89667 Query 177058 ACCTGCAGT-GTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTA 177116 | |||||| || | | || | ||| |||| ||| | | ||| | || | Sbjct 89666 AATTGCAGTAGTTC------TAATAGACTAGACCAGGCTATGCAGGTGACAGAGACTCTT 89613 Query 177117 GCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTT 177172 | |||||||| |||||||| || || ||||| || || || ||||||||||| Sbjct 89612 GGAATGACACACTGCTGCATCAATCCTGTCATCTATGCCTTTGTTGGGGAGAAGTT 89557 Score = 89.7 bits (98), Expect = 6e-13 Identities = 163/236 (69%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 10057 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 10116 ||||||| | ||| ||| | ||||||||||||| ||||||| | | ||| ||| | || Sbjct 89786 AAGAAGAGGCACAGGGCTGTGAGGCTCATCTTTGCCATCATGATTGTCTACTTTATCTTC 89727 Query 10117 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTT---CTTA-- 10171 ||||| |||||||||||||| || || ||| ||||| || | | | || || | Sbjct 89726 TGGACTCCCTACAACATTGTCCTTCTCCTGATGACCTTCCAGGAATTCTTTGGGCTGAAT 89667 Query 10172 ACCTGCAGT-GTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTA 10230 | |||||| || | | || | ||| |||| ||| | | ||| | || | Sbjct 89666 AATTGCAGTAGTTC------TAATAGACTAGACCAGGCTATGCAGGTGACAGAGACTCTT 89613 Query 10231 GCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTT 10286 | |||||||| |||||||| || || ||||| || || || ||||||||||| Sbjct 89612 GGAATGACACACTGCTGCATCAATCCTGTCATCTATGCCTTTGTTGGGGAGAAGTT 89557 >seq68 Length=11249547 Score = 129 bits (142), Expect = 7e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 || || |||| ||| || | ||||||||| ||||||| |||||||| |||||||||||| Sbjct 11209799 AGACCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGC 11209858 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| ||||| || || || | |||||| || ||||| || |||||||| || Sbjct 11209859 ACGCCCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTACC 11209918 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||| || || ||| ||||| || ||||| ||||| Sbjct 11209919 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 11209959 >seq95 Length=9356868 Score = 118 bits (130), Expect = 1e-21 Identities = 112/142 (79%), Gaps = 7/142 (5%) Strand=Plus/Plus Query 138099 CCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCCTT--TTCCTGGTCGGTG 138156 ||||||||| || ||||| || || |||||||||| | ||||| || |||| | Sbjct 743787 CCTGAGGGTCTTCAGCTTCTCTCCTAGGGAGTTCAAATGCTCCTTGATTTCTGG-----G 743841 Query 138157 CTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGGATCATCTCAGACAGG 138216 | ||||||||| |||||||||||||| || ||||||||||||||||||| || || | | Sbjct 743842 CCGTGGTTCTCTGCCTGGGGCATCACTTCTACCAGGTAAAACTGGATCATTTCTGATAAG 743901 Query 138217 GCCTGGCAGCCCAGGTAACCCT 138238 | ||||| |||| |||||||| Sbjct 743902 GTTTGGCAACCCAAGTAACCCT 743923 Score = 96.9 bits (106), Expect = 4e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 137924 AGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGC 137983 || ||||||| || |||||||||| | |||||| |||| |||||||||||||| || Sbjct 741648 AGCTTTTCATTTTGATGGTCATGTACACTTCTATGCAGTTGATGAAGATGTCAAATTCAT 741707 Query 137984 TCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 ||||||||||| |||| ||||| || ||||||| Sbjct 741708 TCATGGCCTTGAAGACGCCTTTCTCTTGGAGCT 741740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589918334875360