Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq3316 232 8e-56 seq39 111 2e-19 seq36 91.5 2e-13 >seq3316 Length=9514 Score = 232 bits (256), Expect = 8e-56 Identities = 262/351 (75%), Gaps = 0/351 (0%) Strand=Plus/Plus Query 83049 GCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGT 83108 || ||| |||||||| || ||||| || || | | | | ||| | ||||| |||||| Sbjct 3328 GCTGGGCCAGCAGGGCTTCTATGTCAGGTTCGATGTCGATGGTGCGAAAGCGGCGGCTGT 3387 Query 83109 ACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGT 83168 |||||||||| || ||||| | ||||||||||||||||| ||||||||||| | || Sbjct 3388 ACCTGCGCACTGGAACACCGTCGGGGCCCACCAAGAACTTCTCAAAGTTCCAGGCAATGT 3447 Query 83169 CGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGT 83228 ||||||||||||| |||||||| ||| || ||||||| ||| ||||| || || Sbjct 3448 CGTTGCGGCACACCGGAGACCAAATGATGTACTTGGGGTCGGTCATGAGCGCAGTCGGGT 3507 Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288 |||| || ||||| |||| || ||| || ||||||| |||||||| || ||| | ||| Sbjct 3508 CGTCACTGGGCGCTGGCAAGGACTCCCGCAGGAAGGTAAAGAGCGGGTGAGCCTTCTCAC 3567 Query 83289 CGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGA 83348 | |||||||||||||| ||||| | ||||||| || ||||| || || || || | Sbjct 3568 CATTGACCTCGCACTTTTCGAACAATGTAAAGTTGGGTTCGAACCCCCCACCGGGTCGAA 3627 Query 83349 CGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGAC 83399 | ||| |||||| || ||||| | |||| ||| || |||| | ||| Sbjct 3628 TATACTTGAGGGAATTCAGAATCTCTTCGTTCTTGGCATTCTCCTAGAGAC 3678 Score = 154 bits (170), Expect = 2e-32 Identities = 159/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || |||||||| || |||||||| || ||||| |||| || || | || |||| Sbjct 3885 CCTGATGTCCGAACTGATTGCACGGGAAACCGAGCACCACCAAGCCACGGGGCCCGAGGC 3944 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||| |||||||||| ||||| ||||| ||| | |||||||||||||| | Sbjct 3945 GTCTCTGCAGATCGTTCATCTCGGTGTAGTCCCGAGTCGTTGTGCCTCAGAGGGACGCCA 4004 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| |||||| | | |||| | | ||||||| || || || | Sbjct 4005 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGTTCACAGGCTCCCCGCCCG 4064 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | |||||| || |||||||| ||||| Sbjct 4065 CGAGCGGGCGCGCGGAGAAGGCATACAC 4092 >seq39 Length=16574428 Score = 111 bits (122), Expect = 2e-19 Identities = 186/264 (70%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || || | | ||| || ||| || |||||| || || ||| Sbjct 615065 GCAGCTGCGCAGCATCTATGAGAGCA-GCCTGTCCATTGGCAACTTTGCCTCCCGCCTGC 615007 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | |||||| Sbjct 615006 TGGTGCACCTGTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTATAACTGCA 614947 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| ||| | || || |||| |||||| Sbjct 614946 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCTGCCCGCATCCGGCTGATCCGCCACTAT 614888 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| |||| || ||||| |||||||||| ||||| ||| Sbjct 614887 GTGCAGCTGCTCTACCCCAGAGCCAAGAACGACCGCGTGTGGACTCTGGAGTTCGTGGGC 614828 Query 50648 TGCCTGGACGAGCGCTGCCGGCGC 50671 ||||||||||||||||| ||| Sbjct 614827 AAGCTGGACGAGCGCTGCCGACGC 614804 >seq36 Length=18054249 Score = 91.5 bits (100), Expect = 2e-13 Identities = 176/257 (68%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| |||||||||||||| || ||||| ||| ||| ||| ||||||| Sbjct 7062244 GAACTTCTCAAAGTTCCAGGCCACATCTGAGCGGCGCACCGGACTCCACATGATGAGCTT 7062185 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262 ||| ||| ||| ||||| | | ||| ||| ||| ||||| ||| ||| | Sbjct 7062184 GGGATCGGTCATGAGCGAGAACGGGTCATCGTAAGGGTAGGGCAGCTTGTCTTTCAGGTA 7062125 Query 83263 GGCGAAGAGCGGATG-TGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGT 83321 ||| |||| ||||| || ||| ||||||||||| ||||| | | || | ||| Sbjct 7062124 GGCAAAGACAGGATGCTGGTTCTGC-CCGTTGACCTCACACTTTTGGGTAAGACTGAAGG 7062066 Query 83322 TCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCT 83381 | |||| | | || |||||| ||||| | ||| ||| || |||||| | |||| Sbjct 7062065 TGGGCTGGTACCCACCCCCAGGGCGGACATACTTGAGGCTGTTCAGGATCTCCTCGTTCT 7062006 Query 83382 GGGCGTTTTCCTGGTGA 83398 | ||| |||||| || Sbjct 7062005 GACAGTTCTCCTGGAGA 7061989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608633307619360