Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq34 138 1e-27 seq11 105 6e-18 seq15 102 7e-17 seq44 93.3 4e-14 seq33 93.3 4e-14 >seq34 Length=19385306 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| || || | ||||||| |||||| |||||||| || || ||||| ||||||| | Sbjct 7139873 CCCCCGCGAAGACGAAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAC 7139814 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||||||| | ||||||| ||| ||||| ||| | || |||||||||||||| || Sbjct 7139813 AGGGTTTGGCCATCCTCCACCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGATGGA 7139754 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||| | |||||| || || | ||| || |||| |||||| Sbjct 7139753 ATGCCTTCCTTATATTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAAC 7139694 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || ||||||||||| || || || ||||| || ||||| ||| Sbjct 7139693 TCAAGAGTGATGGTCTTGCCCAACAAGGTCTTCACAAAGATCTGCATGTTG 7139643 >seq11 Length=24937227 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| || ||||| || || ||||| || || | || || || | || Sbjct 14395179 GAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 14395238 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||| ||| | || |||| ||||||||| ||| | ||| ||||| || Sbjct 14395239 TTCCAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATC 14395298 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| || || | ||| || |||| ||||||| |||| ||| ||||| Sbjct 14395299 CTGGATCTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 14395358 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||| | || || || || || ||||| Sbjct 14395359 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 14395391 >seq15 Length=24491037 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| | || |||||||| || || ||||| |||| || ||| | || | || Sbjct 10712780 AGCACCAGGTATAAGGTGGACTCTTTCTGGATGTTGTAGTTCGACAGCATGCGGCCACCC 10712839 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || |||||||||||||| || | ||||| ||| || Sbjct 10712840 TCCAGCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGGTGGAATGCCTTTCTTATCT 10712899 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || |||| |||||| || | || |||||| Sbjct 10712900 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTC 10712959 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 ||||| || | || || ||||| || ||||| ||| Sbjct 10712960 TTGCCTGTCAGGGTCTTCACAAAGATCTGCATGTTG 10712995 >seq44 Length=14409287 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||||| | |||||| || || | ||| ||||| | |||||| |||| ||| Sbjct 3701609 AGCACCAGGTGCAAGGAGGACTCTTTCTGGACGTTGTAGTCTGACAGGGTGCGGGCATCC 3701668 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTT 21079 |||||||| ||||| ||| | || |||||||||| ||| || | ||||||||| Sbjct 3701669 TCCAGCTGCTTGCCAGCAAATATCAGTCTCTGCTTGTCAGGTGGAATGCCTTCCTT 3701724 >seq33 Length=18013292 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||| || ||||| |||||||| || | ||||| |||||| |||||| ||| | ||||| Sbjct 16639524 CACGATGTGCAAGGTGGACTCTTTCGGGATGTTGTAGTCCAACAGGGTGTGGTCATCCTC 16639465 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 |||||| |||| ||| | || || ||||||||||| || | | ||||||| || Sbjct 16639464 CAGCTGCTTGCTGGCAAATATCAGCCTCTGCTGGTCAGATGGGATGACTTCCTTATCTTG 16639405 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 |||||| || || | | | || |||| |||||| || | || |||||||| Sbjct 16639404 GATCTTGGTCTTGACATTCTCAATAGAGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 16639345 Query 21146 GCCGGTTAACGTTTTGACAAATAT 21169 ||| | | || || ||||| || Sbjct 16639344 GCCCATCAGGGTCTTCACAAAGAT 16639321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422148637234544