Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq11 145 8e-30 seq35 120 3e-22 seq86 114 1e-20 seq88 102 8e-17 seq34 82.4 8e-11 seq15 82.4 8e-11 >seq11 Length=24937227 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 14395391 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 14395332 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||||| || || | || || |||||||||||| | ||||| Sbjct 14395331 GACACCATCGAAAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCA 14395273 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||||||||| || ||||| |||||||| || | ||||| || || ||||| Sbjct 14395272 GCAGCGACTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 14395213 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| | || ||||| || || | ||| | ||||| ||| Sbjct 14395212 CATCCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGCCTCAGGGGTGGC 14395164 Score = 100 bits (110), Expect = 3e-16 Identities = 106/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || || || ||||| ||||||||| | || || || || Sbjct 14396261 AAAATGCAAATCTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCC 14396202 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | ||||| |||||| || || | || || |||||||||||| | || Sbjct 14396201 AGTGACACCATCGAAAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGA 14396143 Query 40806 CCAGCAACGACTCATCT 40822 |||||| |||||||||| Sbjct 14396142 CCAGCAGCGACTCATCT 14396126 >seq35 Length=17774785 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| |||||||| ||||| || ||||||||||| ||||| || ||||| ||||| | Sbjct 13464797 TGGTAGCCTTCGCTGCCGTAGAAGGCGTCTTCTTCTCGGGGTCGTTTGCCGCTATATTCT 13464856 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||||||||| || || |||||| |||||||||||| ||||| Sbjct 13464857 GGCTGAAGAAGAGAGGCCTCATGCCAGGACTCACTTTCTCAAACGAGCTCATCAGCAGGG 13464916 Query 117162 ACGAGG 117167 |||||| Sbjct 13464917 ACGAGG 13464922 >seq86 Length=10151807 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40688 AAATG-CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||| ||||| || ||||||| || || ||||| ||||||||| | || || ||| || Sbjct 3693355 AAATGGCAAATTTTAATAAAAACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAACCC 3693296 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | || | ||| || || || | || ||||||||||||||||| | Sbjct 3693295 AGTGACACCATTCAGAATGTCAGGGTCAAGATCCAGGATAAAGAGGGCATCCCCGCCCTC 3693236 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || | |||||||| || ||||| || ||||| || || |||| || || ||| Sbjct 3693235 CAACAGCAACTCATCTTTGCCGGCAAGCAACTGGAAGATGACTGCACTCTTTCTGATTAC 3693176 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGC-GCTTGAGGGGCGGC 40917 | ||||||| | ||| ||| ||||| || || | | |||||||| ||| Sbjct 3693175 AGCATCCAGGAAGAGTTCACCCTGCACCTGGTCCTCCATTTTGAGGGGTGGC 3693124 >seq88 Length=9234670 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| ||||||||||| |||| || ||| || Sbjct 4564285 AACATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCC 4564226 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | |||| || || | || || || || || || | ||| Sbjct 4564225 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 4564166 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || || || ||||||| || | ||||| | |||||| Sbjct 4564165 CAGCAGAGGCTGATCTTTGCTGGTAAGAAGCTGGAAGATGGCCGCACGTTGTCTGACTAC 4564106 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||||||| |||||| |||| || || || |||||| Sbjct 4564105 AACATCCAAAAGGAGTCCACCCTTCACCTTGTGTTG 4564070 >seq34 Length=19385306 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || | |||||| |||||||| | || |||| || Sbjct 7139644 AACATGCAGATCTTTGTGAAGACCTTGTTGGGCAAGACCATCACTCTTGAGTTCGAGCCC 7139703 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | | || || ||||| || | ||| Sbjct 7139704 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAATATAAGGAAGGCATTCCATCTGAC 7139763 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| |||| || | || ||||| ||| |||| || | | ||||| |||||| Sbjct 7139764 CAGCAGAGACTGATATTTGCTGGCAAGCAGGTGGAGGATGGCCAAACCCTGTCGGACTAC 7139823 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||| ||| |||| ||||||| ||| Sbjct 7139824 AACATCCAGAAAGAGTCCACCTTGCATCTGGTG 7139856 >seq15 Length=24491037 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| |||||||| | || ||||| || Sbjct 10712994 AACATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCC 10712935 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | || || | ||||| || | ||| Sbjct 10712934 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGAAAGGCATTCCACCTGAC 10712875 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| |||| || | || ||||| |||||||| | | |||| || ||||| Sbjct 10712874 CAGCAGAGACTGATATTTGCTGGCAAGCAGCTGGAGGGTGGCCGCATGCTGTCGAACTAC 10712815 Query 40867 AACATCCAGAAGGAGGCCAC 40886 ||||||||||| ||| |||| Sbjct 10712814 AACATCCAGAAAGAGTCCAC 10712795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515080837883840