Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq11 113 5e-20 seq12 104 3e-17 seq309 100 3e-16 seq236 100 3e-16 seq158 100 3e-16 seq102 100 3e-16 seq28 100 3e-16 seq150 96.9 4e-15 seq178 95.1 1e-14 seq263 91.5 2e-13 seq88 87.8 2e-12 >seq11 Length=24937227 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || |||||||||| ||||| || | || || |||||||| || || || Sbjct 14395200 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 14395259 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||||||||||||||||| || | || |||||| ||| ||| || |||| | Sbjct 14395260 GATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTT 14395319 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 14395320 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 14395379 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 14395380 GAAGATCTGCAT 14395391 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 || |||||| || | ||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 8081623 ATCTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 8081682 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 8081683 CACTATACTAACGAGGA 8081699 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 43044 CCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT 43103 || || || ||||||||||||||||||| || | || |||||| ||| ||| || Sbjct 14396119 CCTGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCC 14396178 Query 43104 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGC 43163 |||| | | | ||||| || | ||||| || | |||||||| ||||| || || Sbjct 14396179 TTGACGTTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGA 14396238 Query 43164 GTCTTTACAAAGATTTGCATTTTTAC 43189 ||||| || |||||||||||||| || Sbjct 14396239 GTCTTCACGAAGATTTGCATTTTGAC 14396264 >seq12 Length=25144588 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 6912941 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 6913000 Query 60125 ATACTACCGAGGATT 60139 |||||| |||||||| Sbjct 6913001 ATACTAACGAGGATT 6913015 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 4603723 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 4603782 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4603783 TACTAACGAGGA 4603794 >seq309 Length=382471 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 379322 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 379381 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 379382 ATACTAACGAGGA 379394 >seq236 Length=1459171 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1118727 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1118786 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1118787 ATACTAACGAGGA 1118799 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1090525 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1090466 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1090465 TACTAACGAGGA 1090454 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1113309 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1113368 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1113369 TACTAACGAGGA 1113380 >seq158 Length=4249057 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 37839 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 37780 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 37779 ATACTAACGAGGA 37767 >seq102 Length=8054149 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3721272 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3721213 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 3721212 TACTAACGAGGAT 3721200 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 3723740 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 3723681 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 3723680 ATACTAACGAGGA 3723668 >seq28 Length=19452151 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 19419206 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 19419265 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 19419266 ATACTAACGAGGA 19419278 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| |||||||| |||||||||||| || ||||||||| Sbjct 19443999 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCACGTGACAGGCGGGGATGCTCACCACT 19443940 Query 60125 ATACTACCGAGGA 60137 |||||| ||||| Sbjct 19443939 ATACTAAGGAGGA 19443927 >seq150 Length=4742123 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| | ||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 223674 TCTCCCCATCAGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 223733 Query 60125 ATACTACCGAGGA 60137 |||||| | |||| Sbjct 223734 ATACTAACAAGGA 223746 >seq178 Length=3274853 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| | | ||||||||||||| ||||||||||||||||||||| ||||||| |||| Sbjct 1743592 TCTCCCCATCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCATCACT 1743651 Query 60125 ATACTACCGAGGATT 60139 |||||| |||||||| Sbjct 1743652 ATACTAACGAGGATT 1743666 >seq263 Length=932407 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||| ||||||||| ||||||||| ||||||||||| |||||||||||| Sbjct 675192 TCTCCCCGTCGGGGCATCGAACCCCGGTCTCCCGAGTGACAGGCGGGGATACTCACCACT 675251 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 675252 ATACTAACGAGGA 675264 >seq88 Length=9234670 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | || | ||| ||||||||| || ||||| |||| || || || | || Sbjct 4564070 CAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCATC 4564129 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || |||| ||||||||| || || || | ||||||||| | || | | ||||| || Sbjct 4564130 TTCCAGCTTCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTATC 4564189 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || || | | | | ||||| | ||| || |||| ||||||||| Sbjct 4564190 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 4564249 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||| ||||| || ||||| || || || ||||| || Sbjct 4564250 TTTCCCCGTAAGGGTCTTCACGAAAATCTGCATGTT 4564285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571664038383520