Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq270 89.7 8e-13 >seq270 Length=930488 Score = 89.7 bits (98), Expect = 8e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| || ||||||| |||| ||||||| | |||| || || |||| | || | Sbjct 655839 TTCCTTCTGGGTGTTATGGAAGAGTAGCTCCACGCTCTGGCTTGGCAGTAAAGCACTTCA 655780 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | ||||| || || || ||||||||||||||||||||||| || || | | | Sbjct 655779 TAGATGTGGGAGCCGGTGTCATAGACGAAGATTATAGAGGAAATGTTGGTGTTGTGCTGT 655720 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 |||| | || || | ||| | |||| | ||| ||| |||| | || | || | Sbjct 655719 TTAACTTTGGAAAAGAGAAGTTTGAAGTAAAAAAAGGTGATCGAATTGCACAGCTCATTT 655660 Query 10609 GTGAAAAAATTTTATATCC 10627 ||||| ||||| ||||| Sbjct 655659 GTGAACGGATTTTTTATCC 655641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743326725985280