Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq35 104 2e-17 >seq35 Length=17774785 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 15884 CTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943 || |||||||| ||| | | || ||||||||| | | | | ||| |||| | Sbjct 13474570 CTCTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCCGCCATGACTGCAAAA 13474511 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| ||| ||||| || ||||||||||||||||| |||||||||||||| ||| Sbjct 13474510 CGCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTT 13474451 Query 16004 TCCATAAAATCAAAAGGATTTTTTG 16028 |||||||||||||| ||||||| || Sbjct 13474450 TCCATAAAATCAAAGGGATTTTCTG 13474426 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 |||||||| || || | ||||||||| || || || |||||||| || |||| || || Sbjct 13464920 TCGTCCCTGCTGATGAGCTCGTTTGAGAAAGTGAGTCCTGGCATGAGGCCTCTCTTCTTC 13464861 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| |||||||||||||| || || || ||||| | ||||| || || || || || Sbjct 13464860 AGCCAGAATATAGCGGCAAACGACCCCGAGAAGAAGACGCCTTCTACGGCAGCGAAGGCT 13464801 Query 16379 ACCAATC 16385 |||| || Sbjct 13464800 ACCACTC 13464794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462387792402400