Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq56 1086 0.0 seq7 122 6e-23 >seq56 Length=11875786 Score = 1086 bits (1204), Expect = 0.0 Identities = 1038/1323 (78%), Gaps = 9/1323 (1%) Strand=Plus/Plus Query 107316 AAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGC 107375 |||||| | ||||||||| || | || || | |||| ||||| || |||||||| Sbjct 1832902 AAGATGATTTTGTGGAAGAA--AG-TCTGTTGGCGCTATCAGGTGTGGACCGTGGGCTGC 1832958 Query 107376 TATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGAT 107435 || ||||| |||||| | || | |||| ||| |||||||| | || ||||| | || Sbjct 1832959 TACATGCTTCTGGCCATCATTGCCCTGAAACTGTCCCTCAGACTGAAGTGTGACTTCAAT 1833018 Query 107436 TCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAAT 107495 | | |||||||| || | ||| || | || ||| |||| ||||| | ||||||| Sbjct 1833019 GTCCTAGATCTGGACTCTAAGGAATTTCGCAGCCAGTACTGCAGGGATTTCCTGTACAAG 1833078 Query 107496 AGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAG 107555 | ||||||| |||||||||||| |||||||||||||| ||| |||| |||||||| || Sbjct 1833079 AACCTGAAGTTGCCAGCAAAGACGTCCATCAACTGTTCCGGGGTCACTCGAGGGGAGCAC 1833138 Query 107556 GAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTC 107615 |||| ||| ||||||| || || | |||||||| | ||||| |||||| ||| ||| Sbjct 1833139 AAAGCGGTGATCCAGGCTCTGCTGAATAACCTGGAGATTAAGAAGAAGCGGCAGCCCCTC 1833198 Query 107616 ACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAG 107675 || | | | ||||| | ||| || |||||| |||| |||||| || |||||||| Sbjct 1833199 ACAGAGGTCGACTACCTTAGCATGACAGCAGACTGCGAGCAATTCAAGACCAAAAGGAAG 1833258 Query 107676 TTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTG 107735 |||||||||||| | ||||| |||| |||| |||||||||||||| || || |||||| Sbjct 1833259 TTCATACAGTTCTCGCTGAGCAAAGGAGAGGCCGACTTCCCCATTGCATATTCTATGGTG 1833318 Query 107736 GTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAAC 107795 |||||||||||||| || ||||||||| || |||||||||| ||||| |||| |||||| Sbjct 1833319 GTCCATGAGAAGATCGAGAACTTTGAAAGGTTGCTGCGAGCTGTGTACGCCCGCCAGAAC 1833378 Query 107796 ATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCC 107855 |||||||||||||| ||||| ||||||||| || | ||||| |||| |||| ||| Sbjct 1833379 ATATACTGTGTCCATGTGGACCAGAAGTCCCCGGAAATCTTCAAGCAGGCAGTCAGAGCC 1833438 Query 107856 ATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCC 107915 ||| || |||||||| ||||||||||| || |||||| |||| | ||||| ||||| Sbjct 1833439 ATTGCATCATGCTTCCCAAATGTCTTCATAGCTAGTAAGCTGGTGTCAGTGGTCTATGCT 1833498 Query 107916 TCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTG 107975 ||||||||||| || || |||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1833499 TCCTGGTCCAGGGTACAGGCTGACCTGAACTGCATGGAAGACTTGCTCCAGAGCTCCGTG 1833558 Query 107976 CCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAG 108035 |||||||| ||| | ||||| || || ||||||||||| ||||| ||||| ||||| ||| Sbjct 1833559 CCATGGAAATACCTCCTGAACACCTGTGGGACAGACTTTCCCATCAAGACAAATGCTGAG 1833618 Query 108036 ATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCT 108095 ||||||| |||||||||| | ||||| || ||||||| |||||||| |||||||| | Sbjct 1833619 ATGGTCCAGGCCCTCAAGCTTTTGAATGGGCAGAACAGCATGGAGTCAGAGGTACCACC- 1833677 Query 108096 GAGTC-CaaaaaaaaT--CGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCT 108152 | | || |||| || |||||||||||||| ||||| |||| ||||||| ||||| Sbjct 1833678 --GCCACATAAAACATTACGCTGGAAATACCGATATGAAGTGAAAGACACATTGTACATA 1833735 Query 108153 ACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTAT 108212 |||| ||||| ||| |||||| || |||| || |||| ||||| ||||||||||| Sbjct 1833736 ACCAACAAGAGGAAAACCCCTCCACCAAATAACATAACCATATTCACTGGGAATGCCTAC 1833795 Query 108213 TTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTG 108272 | ||||| ||||||| ||| | |||| || ||| ||||| | ||| ||||| ||| Sbjct 1833796 ATGGTGGCTTCTCGAGACTTCATTGAACAGGTATTAAACAACTCCAAAGCCCAACAACTA 1833855 Query 108273 GTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGT 108332 |||||||||| |||||||||||||| || || |||||||| ||||||||||| |||||| Sbjct 1833856 ATTGAATGGGTAAAAGACACCTATAGTCCTGATGAACACCTATGGGCCACCCTCCAGCGT 1833915 Query 108333 GCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACT 108392 || | ||||||||||| || | ||| |||| ||| | | || |||||||||||| Sbjct 1833916 GCCTCATGGATGCCTGGATCAGCTCCCTTGCACCACAAATTTGACCTCTCAGACATGAGA 1833975 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452 | || || ||||| |||||||||| |||||||||||| | | ||||||||| Sbjct 1833976 TCTATTGCGAGGCTAACCAAGTGGCAGAGCCACGAGGGAGACATTGAGAGGGGGGCGCCC 1834035 Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512 || |||| ||||| || ||||| | | |||| |||| ||||| || | ||||||||| Sbjct 1834036 TACACACCTTGCTCAGGCATCCACCAGCGGGCTGTCTGTATTTATGGATCTGGGGACCTG 1834095 Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGAT 108572 ||||| | || ||||||||||| |||||||| |||||||||||||| | ||| || ||| Sbjct 1834096 CACTGGCTACTTCAGAACCATCATCTCTTGGCCAACAAGTTTGACCCAAAGGTAGACGAT 1834155 Query 108573 AACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTT 108632 |||||||| ||||| |||||||| || |||||||| || |||||||||||||| ||||| Sbjct 1834156 AACGTCCTTCAGTGTTTAGAAGAATATCTACGTCACAAAGCCATCTATGGGACCGAACTG 1834215 Query 108633 TGA 108635 ||| Sbjct 1834216 TGA 1834218 >seq7 Length=28733031 Score = 122 bits (134), Expect = 6e-23 Identities = 182/253 (72%), Gaps = 14/253 (6%) Strand=Plus/Minus Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841 ||||||| ||||||| |||||||| || |||||| |||| | ||||||| ||||||| Sbjct 12320829 ATGCCCC--AGAACATCTACTGTGTGCATGTGGATAGGAAGGCAACAGAGACCTTCAAAG 12320772 Query 107842 AGGCGGTCAAGGCCATTATTTC-CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 | || ||| || | |||| | ||| || ||||||| |||| ||||| |||| ||| Sbjct 12320771 ACGCCGTCCAG-CGATTACTGAGCTGTTTTCCCAATGCCTTCCTGGCCTCTAAGATGGAG 12320713 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 || ||||| |||| || ||| | | || |||||||||||||| ||| |||| || Sbjct 12320712 CCTGTGGTCTATGGTGGCTTCTCCCGCCTCCAGGCTGACCTGAACTGCATGAAAGATCTG 12320653 Query 107961 -----CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCC 108015 ||||| || || || ||||| || | || || || |||||| ||||||| Sbjct 12320652 GTGGCCTCCA-AG----GTCCCCTGGAAATATGTCCTCAACACCTGCGGGCAGGACTTCC 12320598 Query 108016 CCATAAAGACCAA 108028 || | || ||||| Sbjct 12320597 CCCTGAAAACCAA 12320585 Score = 91.5 bits (100), Expect = 1e-13 Identities = 227/337 (67%), Gaps = 12/337 (4%) Strand=Plus/Minus Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGA-TTGAAAAC 107756 |||||||| | ||||||| | |||||| ||||| |||| | ||| || || || Sbjct 12264477 AAGAAGAGGCTGCCTTCCCCCTGGCCTACATTATGGTAATCCACAA--AGACTTCAACAC 12264420 Query 107757 -TTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGA 107815 |||||| |||| | | ||| | ||| |||||||| | ||||| || |||||||| Sbjct 12264419 CTTTGAAAGGCTCTTCAGGGCCATTTATATGCCTCAGAATGTCTACTGCGTGCACGTGGA 12264360 Query 107816 TGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCC-TGCTTCCCCA 107874 || || |||| | || || ||| |||||| ||| ||| | | |||||||| | Sbjct 12264359 TGAAAAAGCCCCCGGGAAGTTTAAAAGGGCGGTGT-GGCAATTGCTACAGTGCTTCCCGA 12264301 Query 107875 ATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAG 107934 | | ||| |||| |||| | |||||| |||| || ||| | | || | Sbjct 12264300 ACGCTTTCCTGGCTTCTAAGGCAAACAAGGTGGTCTATGGGGGCTTTTCCCGCCTCCAGG 12264241 Query 107935 CTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTC---AGTGCCATGGAAGTACTTAC 107991 ||||||||||||| ||| |||| || | || ||| || || ||||| || | | Sbjct 12264240 CTGACCTGAACTGCATGAAAGATCTGGT---GACCTCCGAGGTCCCCTGGAAATATGTTC 12264184 Query 107992 TGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || || |||||| ||||||||| | || ||||| Sbjct 12264183 TCAACACCTGCGGGCAGGACTTCCCCCTGAAAACCAA 12264147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348177610603416