Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq34 86.0 5e-12 >seq34 Length=19385306 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| || | || || ||||| || ||||||||||| | | Sbjct 7139873 CCCCCGCGAAGACGAAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAC 7139814 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | ||| |||| || ||||| ||| | || ||||| || || || || Sbjct 7139813 AGGGTTTGGCCATCCTCCACCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGATGGA 7139754 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | |||||| | | | ||||||| ||||||| Sbjct 7139753 ATGCCTTCCTTATATTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAAC 7139694 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||| |||||| | ||||| ||| || || ||||| || ||||| || Sbjct 7139693 TCAAGAGTGATGGTCTTGCCCAACAAGGTCTTCACAAAGATCTGCATGTT 7139644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379244673989580