Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq44 125 9e-24 seq270 109 7e-19 seq116 102 1e-16 seq69 82.4 1e-10 >seq44 Length=14409287 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || ||||||||||| ||||| ||||| |||||||| || |||||||| || ||||| | Sbjct 13238029 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATG 13237970 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||| ||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 13237969 GACTCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 13237910 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 13237909 CTGTTTCTTACACCATA 13237893 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 ||||||| ||||| || || | || || ||||| | ||| || || || || || || | Sbjct 13234381 CATATGTCTCATAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCAT 13234322 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||| ||||||||||| | |||||| | || ||||| ||||| |||||||||| Sbjct 13234321 AATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGAGCTTCTGGGCTCTCAAATGGAT 13234262 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | | || || || || |||| ||||| || ||||| || || || | ||| | Sbjct 13234261 ATCTCATCAAGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGC 13234202 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 13234201 GTTTATTTGA 13234192 >seq270 Length=930488 Score = 109 bits (120), Expect = 7e-19 Identities = 208/304 (68%), Gaps = 7/304 (2%) Strand=Plus/Plus Query 31351 ACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCA 31410 |||||||| | || |||||| | || |||| | | || ||||| || |||| ||| || Sbjct 655626 ACTTCTTCTAAGTCCGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCT 655685 Query 31411 GTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTA 31470 | ||||| | |||| | ||||||| |||| || | || || | ||||| ||| Sbjct 655686 TTTTTTACTTCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAACATTTCCTCTA 655745 Query 31471 TAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGAC 31527 |||||||||||||| |||||| |||| | ||| || | |||| | || ||||| Sbjct 655746 TAATCTTCGTCTATGACACCGGCTCCCACATCTATGAAGTGCTTTACTGCCAAGCCAGAG 655805 Query 31528 CTAGGAGCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATT 31587 | ||||||| ||| ||||| || ||| | | || ||| ||||| || | Sbjct 655806 CGTGGAGCTACTCTTCCATAACACCCAGAAGGAACAGCTATCTGAATGTCTGTTTTCA-- 655863 Query 31588 AACTGTCGTTCTCC--AGGAGGGATAGTATAATCGTAAGCGCTATACAAATCATATCCGG 31645 | || | |||||| ||| || || |||||||| || || || |||| || || || | Sbjct 655864 CAATGGCTTTCTCCATAGGTGGTATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCG 655923 Query 31646 CAGC 31649 |||| Sbjct 655924 CAGC 655927 >seq116 Length=7290106 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||| ||| ||| | | ||| | ||||||||||| ||||||||||||| ||| Sbjct 6253352 GTTACTTTTTATAATGTGTACCTGGTTCTGCAAGCTTTCATACTGACTACTGCAGTCTTT 6253411 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| ||||| | | ||||||||| ||||||||||| ||||| ||| ||| | |||| Sbjct 6253412 CTTGGCTTGACTGCCTATACTCTACAGTCAAAGAGAGACTTCAGCAAATTTGGAGCAGG 6253470 >seq69 Length=12026347 Score = 82.4 bits (90), Expect = 1e-10 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 33567 TGTTTAAACATCAAACATGCGAAA-TCGCAGTGCAGACCCTCGTCTCTACTAATTAATTC 33625 ||||| |||||| || || | | || ||||||| |||||||||||| ||||| | || Sbjct 4703497 TGTTTGGACATCAGGCA-GCTAGAGTCACAGTGCAAACCCTCGTCTCTGCTAATAAGCTC 4703439 Query 33626 GTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA 33685 || ||||| || || |||||| || || | || || ||||| || | || ||| Sbjct 4703438 TTTGGAAAAGCTGCATCTGGGCATCAGTCCTTGTTTCTTGAGCCAGAACACTGATATGAA 4703379 Query 33686 TGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 || || |||||||||||||||| || | |||| ||| Sbjct 4703378 AGAACCAGAAAAGAAGATTCCTTTAACAGTGGCAAGGGC 4703340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629648462483520