Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq44 95.1 1e-14 seq35 87.8 2e-12 seq69 86.0 6e-12 >seq44 Length=14409287 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| || |||||||| || ||||| | || |||| | | | |||| || Sbjct 13241415 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 13241356 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 | | ||| || |||||||| || || |||||||| ||||||||||| | | || | | Sbjct 13241355 TTAATGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 13241296 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 ||||||| || ||||| || || ||||| | ||| || Sbjct 13241295 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTT 13241259 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 37354 CCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCG 37413 ||||| || | ||||| | | |||||||||||| || || || || ||||| || Sbjct 13234403 CCTTTGCTGACCGGAGAGCCCTCATATGTCTCATAGGGGCCATACTCCTTGGCTAGGTCA 13234344 Query 37414 CAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTT 37473 || || | ||| | || ||||||| || ||||| || ||||| |||| |||| | Sbjct 13234343 CAGCTGGCTTCCAAAGCTCCATAATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGA 13234284 Query 37474 GCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACA 37533 |||||| ||| || |||| ||| | || || || || |||| || | ||| || || Sbjct 13234283 GCTTCTGGGCTCTCAAATGGATATCTCATCAAGATGAAAGCATCTGCTAGACCTTGTACC 13234224 Query 37534 CCGATACCTATGGGTCTATGTTTCTTATTAGAT 37566 || || || ||||| | ||| ||||| ||| Sbjct 13234223 CCAATTCCAATGGGCCGATGGCGTTTATTTGAT 13234191 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | |||||||| ||||| | ||||| || || || | || Sbjct 13226667 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 13226608 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| ||| || |||| ||||| | |||||| || | |||||||||||| | | Sbjct 13226607 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 13226548 Query 38533 ATATGTTGTGGTCTTTC 38549 ||||| ||||||||||| Sbjct 13226547 ATATGCTGTGGTCTTTC 13226531 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || ||||| || || ||||| | || || || || || || || ||||||||| Sbjct 13238029 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATG 13237970 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||| ||||| | | || |||| || || |||||||||||||| || || || | Sbjct 13237969 GACTCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 13237910 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 13237909 CTGTTTCTTACACCAT 13237894 >seq35 Length=17774785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | ||| |||||||||| |||||| ||||| || || |||| ||||| || Sbjct 13460980 ATCTCTGATATAAGTATCTATTAGTAAACTGTACATCTCCGAGTGAACGTTTTCGATGAG 13460921 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 ||||| || |||||||||||||| ||||||| |||||| ||| Sbjct 13460920 AATTTGGAAGCCATAGAAACATCGAGCCTCTGGGACCTGTACCTCC 13460875 >seq69 Length=12026347 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 11639 TCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATC 11698 ||||| || ||||| |||||||| || || || || || ||||| | ||| ||||||| Sbjct 4703473 TCACAGTGCAAACCCTCGTCTCTGCTAATAAGCTCTTTGGAAAAGCTGCATCTGGGCATC 4703414 Query 11699 AATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCC 11758 | |||| |||| || | ||| || | | || |||||||||||||| ||||| | Sbjct 4703413 AGTCCTTGTTTCTTGAGCCAGAACACTGATATGAAAGAACCAGAAAAGAAGATTCCTTTA 4703354 Query 11759 ACAGCTGCAAATGCTACTACTCTTTCTCCATA 11790 |||| |||| ||||| || |||||| || Sbjct 4703353 ACAGTGGCAAGGGCTACAACATGTTCTCCGTA 4703322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468398977664960