Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq116 172 7e-38 seq44 122 1e-22 seq270 93.3 6e-14 >seq116 Length=7290106 Score = 172 bits (190), Expect = 7e-38 Identities = 163/208 (78%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || |||||| | |||||| || | |||||||||| |||||||||||| || || Sbjct 6255729 TTACTTTTTATTAACTGCTTCCAGAAACCTCAACAGATGCAGGAACAGATTGATAATGTC 6255670 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 |||||| | |||||| | ||||| ||||| |||||||| || ||| | || || || || Sbjct 6255669 CAAGTAAAGATTGATGGCAGCTAATACATACTCTTCAGGAGACAGCCTGTGCATCAGCGA 6255610 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| ||||||||||| |||||||| ||||| | |||||| || | || || || ||||| Sbjct 6255609 GTGTGTGTCATAGATGATGAATCCACAGAAGAGAAGGGCGCCTAGAGAAGCCAAGACCAA 6255550 Query 9407 CTCCACTGTTTCACTTTGCACAAATATC 9434 |||| ||||||||| || | ||| ||| Sbjct 6255549 TTCCAGTGTTTCACTGTGAAAAAAAATC 6255522 Score = 138 bits (152), Expect = 1e-27 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| ||||||||||| ||||||||||| ||||||| ||||| Sbjct 6253470 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGTAGAGTATAGGCAGTCAAGCCAAGA 6253411 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| ||||||||||||| ||| | | ||||| ||| |||||||| Sbjct 6253410 AAGACTGCAGTAGTCAGTATGAAAGCTTGCAGAACCAGGTACACATTATAAAAAGTAAC 6253352 >seq44 Length=14409287 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || || |||||||| ||||| ||||| |||||||| || |||||||| || ||||| | Sbjct 13238029 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATG 13237970 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||| ||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 13237969 GACTCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 13237910 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 13237909 CTGTTTCTTACACCATA 13237893 Score = 105 bits (116), Expect = 9e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 13220971 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 13220912 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| | ||||| |||||||| |||| Sbjct 13220911 TGGCATAGTCAGGGTGCTTCGTAGTCAAGGTTGCAGCTGTCTCGGCAGCCAGAGTATCCA 13220852 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| |||| | |||||||| || ||||| Sbjct 13220851 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCAT 13220806 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 ||||||| || || || || | || || ||||| ||||| || || || || || || | Sbjct 13234381 CATATGTCTCATAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCAT 13234322 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||| ||||| ||||| | |||||| | || ||||| |||| |||||||||| Sbjct 13234321 AATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGAGCTTCTGGGCTCTCAAATGGAT 13234262 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | | || || || ||||||| ||||| || ||||| || || || | ||| | Sbjct 13234261 ATCTCATCAAGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGC 13234202 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 13234201 GTTTATTTGA 13234192 >seq270 Length=930488 Score = 93.3 bits (102), Expect = 6e-14 Identities = 206/305 (68%), Gaps = 7/305 (2%) Strand=Plus/Plus Query 33952 ACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCC 34011 ||||||| | || |||||| | || |||| | | || ||||| || |||| ||| || Sbjct 655626 ACTTCTTCTAAGTCCGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCT 655685 Query 34012 GTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTA 34071 | ||||| | || | ||||||| |||| || | || || | |||||| ||| Sbjct 655686 TTTTTTACTTCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAACATTTCCTCTA 655745 Query 34072 TAATCTTCGTCTATTACACCGCCTCCTATATCAAT-ACCT--TTTAGGGACAGACCAGAC 34128 |||||||||||||| |||||| |||| | ||| || | | |||| | || ||||| Sbjct 655746 TAATCTTCGTCTATGACACCGGCTCCCACATCTATGAAGTGCTTTACTGCCAAGCCAGAG 655805 Query 34129 CTAGGAGCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATT 34188 | ||||||| ||| ||||| || ||| | | || ||| ||||| || | Sbjct 655806 CGTGGAGCTACTCTTCCATAACACCCAGAAGGAACAGCTATCTGAATGTCTGTTTTCA-- 655863 Query 34189 AATTGTCTTTCTCC--TGGAGGGATAGTATAATAATAAGCGCTATATAAATCATATCCGG 34246 | || |||||||| || || || ||||||| ||| || || || | || || || | Sbjct 655864 CAATGGCTTTCTCCATAGGTGGTATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCG 655923 Query 34247 CGGCG 34251 | ||| Sbjct 655924 CAGCG 655928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657996047694560