Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq68 116 3e-21 seq228 98.7 8e-16 >seq68 Length=11249547 Score = 116 bits (128), Expect = 3e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||| || |||| ||| || |||| || || || ||||| |||||||| ||||| || | Sbjct 11209797 TCAGACCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGG 11209856 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || |||||||| || | ||||||||||| || ||||| ||||||||||| Sbjct 11209857 GCACGCCCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTA 11209916 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || || ||||| | | || |||||||| || |||||| Sbjct 11209917 CCACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATC 11209960 >seq228 Length=1691671 Score = 98.7 bits (108), Expect = 8e-16 Identities = 236/352 (67%), Gaps = 10/352 (3%) Strand=Plus/Plus Query 2894 TAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTTTGTATTGT 2953 |||||||| | ||||||| | ||| ||| |||| | || ||| || | |||| Sbjct 1401586 TAAACAGAACTGCCTCCAACTATCCAAACCATGTTCACTTTGTCTGCTAACTCTGGTTGT 1401645 Query 2954 -CTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGG 3012 | ||| | || || |||||||| || || | || ||||| || ||||| || || | Sbjct 1401646 TCAATA-AGTTTTAAGGCATCGTCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGCAG 1401704 Query 3013 TTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTC 3072 || | ||| |||| | || ||||||||||||| | | ||| || ||||| || Sbjct 1401705 CTCCTTGAGCTCTGTGCTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTC 1401764 Query 3073 AGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGA 3132 || ||||| ||||| || | |||||||| |||| |||| || |||| || Sbjct 1401765 AGAAATGGAGAACCAGGTCTTCCATCCCATAATCACCAGGTTCTGTTTACCT------GA 1401818 Query 3133 TGGCGTAGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCAT 3192 | || | |||||| | || || ||| | | |||||| | || ||||| |||| Sbjct 1401819 GGAGGTGGCAGTCATTCTTTGGAAGTACTTGAATTCGTTCCAGAGCAGAGGCCAGGGCAG 1401878 Query 3193 TGTTCCGTTTTTACCAATTCCTA-ATTGTTCATCAACTGCAACGATGCAGTT 3243 |||||| || ||||| || | ||| | || | || || ||||||||||| Sbjct 1401879 GTCTCCGTTCTTGCCAATGCCCATATTCTGCAAC-ACGGCGACGATGCAGTT 1401929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427663992736320