Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq44 113 6e-20 seq270 100 4e-16 seq69 100 4e-16 >seq44 Length=14409287 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || || |||||||| ||||| ||||| |||||||| || |||||||| || ||||| | Sbjct 13238029 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATG 13237970 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || || ||||| |||| ||| ||||||||||| || || ||||| || || | | |||| Sbjct 13237969 GACTCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 13237910 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 13237909 CTGTTTCTTACACCATA 13237893 Score = 100 bits (110), Expect = 4e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 ||||| ||||| || || | || | ||||| ||||| || || || || ||||| ||| Sbjct 13234379 TATGTCTCATAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCATAA 13234320 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||| ||||| || || | |||||| | || |||||| |||| ||||||||||| Sbjct 13234319 TAAATAGTTTCAAAGATTTGCTTATTCAATAACTGAGCTTCTGGGCTCTCAAATGGATAT 13234260 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | | || || || ||||||| ||||| || ||||| || || || | ||| | Sbjct 13234259 CTCATCAAGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGCGT 13234200 Query 79480 TTATTAGA 79487 ||||| || Sbjct 13234199 TTATTTGA 13234192 >seq270 Length=930488 Score = 100 bits (110), Expect = 4e-16 Identities = 206/304 (68%), Gaps = 7/304 (2%) Strand=Plus/Plus Query 47755 ACTTCCTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCC 47814 ||||| || | || |||||| | || |||| | | || ||||| || |||| ||| || Sbjct 655626 ACTTCTTCTAAGTCCGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCT 655685 Query 47815 GTATTTACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTA 47874 | ||||| | ||| | ||||||| |||| || | || || | ||||| ||| Sbjct 655686 TTTTTTACTTCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAACATTTCCTCTA 655745 Query 47875 TAATCTTCGTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGAC 47931 |||||||||||||| ||||| |||| | ||| || | |||| || || ||||| Sbjct 655746 TAATCTTCGTCTATGACACCGGCTCCCACATCTATGAAGTGCTTTACTGCCAAGCCAGAG 655805 Query 47932 CTAGGAGCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATT 47991 | ||||||| ||| ||||| || ||| | | || ||| ||||| || | Sbjct 655806 CGTGGAGCTACTCTTCCATAACACCCAGAAGGAACAGCTATCTGAATGTCTGTTTTCA-- 655863 Query 47992 AACTGTCTTTCTCC--TGGAGGGATAGTATAATCGTAAGCGCTATACAAATCATATCCGG 48049 | || |||||||| || || || |||||||| || || || |||| || || || | Sbjct 655864 CAATGGCTTTCTCCATAGGTGGTATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCG 655923 Query 48050 CAGC 48053 |||| Sbjct 655924 CAGC 655927 >seq69 Length=12026347 Score = 100 bits (110), Expect = 4e-16 Identities = 122/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 49945 TGTTTAAACATCAAACATGCGAAA-TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTC 50003 ||||| |||||| || || | | || ||||||| |||||||||||| ||||| || || Sbjct 4703497 TGTTTGGACATCAGGCA-GCTAGAGTCACAGTGCAAACCCTCGTCTCTGCTAATAAGCTC 4703439 Query 50004 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 50063 |||||||| || || |||||| || || | || || ||||| || | || || Sbjct 4703438 TTTGGAAAAGCTGCATCTGGGCATCAGTCCTTGTTTCTTGAGCCAGAACACTGATATGAA 4703379 Query 50064 TGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAA 50107 || ||||||||||||||||||| || | ||||| ||| |||| Sbjct 4703378 AGAACCAGAAAAGAAGATTCCTTTAACAGTGGCAAGGGCTACAA 4703335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718075908913760