Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq44 120 4e-22 seq270 100 4e-16 >seq44 Length=14409287 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || || |||||||| ||||| ||||| |||||||| || |||||||| || ||||| | Sbjct 13238029 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATG 13237970 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||| ||||| |||| ||| ||||||||||| ||||| ||||| || || | | || | Sbjct 13237969 GACTCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 13237910 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 13237909 CTGTTTCTTACACCAT 13237894 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 ||||||| || || || || | | | |||||| ||||| || || || || ||||||| Sbjct 13234381 CATATGTCTCATAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCAT 13234322 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||| ||||| || || | |||||| | || ||||| ||||| |||||||||| Sbjct 13234321 AATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGAGCTTCTGGGCTCTCAAATGGAT 13234262 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | | || || || ||||||| ||||| || ||||| || || || | || | Sbjct 13234261 ATCTCATCAAGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGC 13234202 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 13234201 GTTTATTTGA 13234192 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 || |||| ||| | || | || || ||||| || | |||||||| || || |||||| Sbjct 13226688 CTGGACAGTTGTGGGCGGTTGGTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTAAAC 13226629 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 || || ||||| || || ||||| || ||||| || | || ||||| || || ||| Sbjct 13226628 CACTTCTCAGAAAGCAGGTTGTATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATT 13226569 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || || | || | ||| ||||||||||| ||||||||| Sbjct 13226568 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 13226530 >seq270 Length=930488 Score = 100 bits (110), Expect = 4e-16 Identities = 210/306 (69%), Gaps = 9/306 (3%) Strand=Plus/Plus Query 39850 ACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCC 39909 |||||||| | || |||||| | || |||| | | || ||||| || |||| ||| || Sbjct 655626 ACTTCTTCTAAGTCCGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCT 655685 Query 39910 GTATTTACATTGAAAGTACA-TTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCT 39968 | ||||| || ||| | | ||||||| |||| || | || || | ||||| || Sbjct 655686 TTTTTTAC-TTCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAACATTTCCTCT 655744 Query 39969 ATAATCTTCGTCTATTACACCGCCTCCTATATCAAT-ACCT--TTTAGGGACAGACCAGA 40025 ||||||||||||||| |||||| |||| | ||| || | | |||| | || ||||| Sbjct 655745 ATAATCTTCGTCTATGACACCGGCTCCCACATCTATGAAGTGCTTTACTGCCAAGCCAGA 655804 Query 40026 CCTAGGAGCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAAT 40085 | ||||||| ||| ||||| || ||| | | || ||| ||||| || | Sbjct 655805 GCGTGGAGCTACTCTTCCATAACACCCAGAAGGAACAGCTATCTGAATGTCTGTTTTCA- 655863 Query 40086 TAACTGTCTTTCTCC--CGGAGGGATAGTATAATCGTAAGCGCTATACAAATCATATCCA 40143 | || |||||||| || || || |||||||| || || || |||| || || || Sbjct 655864 -CAATGGCTTTCTCCATAGGTGGTATTGTATAATCATAGGCACTGTACAGGTCGTAGCCC 655922 Query 40144 GCGGCG 40149 || ||| Sbjct 655923 GCAGCG 655928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670958965567840