Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq35 89.7 4e-13 >seq35 Length=17774785 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 || || || || || ||||||||||| || || || || ||||| || |||| || || Sbjct 13464920 TCGTCCCTGCTGATGAGCTCGTTTGAGAAAGTGAGTCCTGGCATGAGGCCTCTCTTCTTC 13464861 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| |||||||| |||||||| ||||| || || | ||||| || || || || ||| Sbjct 13464860 AGCCAGAATATAGCGGCAAACGACCCCGAGAAGAAGACGCCTTCTACGGCAGCGAAGGCT 13464801 Query 13295 ATCAACCTTTCACC 13308 | || ||||| || Sbjct 13464800 ACCACTCTTTCCCC 13464787 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 12970 TTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCAT 13029 ||||| | || ||||||||| |||||||| || ||||||||||| ||| |||||||||| Sbjct 13473637 TTCTACAAGCAGTCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAGTTCAT 13473578 Query 13030 TCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065 ||| || | || |||| |||||||||||||| Sbjct 13473577 TCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 13473542 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || |||||||| |||||||| ||||| |||||| Sbjct 13474507 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 13474448 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| || ||||||| Sbjct 13474447 ATAAAATCAAAGGGATTTT 13474429 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 |||||||||||||| | ||| || ||||| || || |||| ||||| || |||||| Sbjct 13460973 ATATAAGTATCTATTAGTAAACTGTACATCTCCGAGTGAACGTTTTCGATGAGAATTTGG 13460914 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 || ||||| ||||||| |||||||| ||||| || || Sbjct 13460913 AAGCCATAGAAACATCGAGCCTCTGGGACCTGTACCTC 13460876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430869553184568