Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq88 141 2e-28 seq35 125 2e-23 seq1 125 2e-23 seq215 123 6e-23 seq102 98.7 2e-15 seq86 95.1 3e-14 seq29 93.3 1e-13 seq31 87.8 4e-12 seq241 86.0 1e-11 seq24 86.0 1e-11 >seq88 Length=9234670 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || |||||||| | || | || ||||| || | || ||| Sbjct 4564086 GTGGACTCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCATCTTCCAGCTTCTTACCA 4564145 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || |||||||| |||||||| |||||||| ||||| || ||| Sbjct 4564146 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 4564205 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||||| || || ||||| ||||| || || || || || || ||||| || Sbjct 4564206 ACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCGTAAGGGTC 4564265 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || |||||||| ||| Sbjct 4564266 TTCACGAAAATCTGCATGTTG 4564286 >seq35 Length=17774785 Score = 125 bits (138), Expect = 2e-23 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || ||||| | || || || || || |||||||| | ||||| |||||||| |||||| Sbjct 13464787 GGGGAAAGAGTGGTAGCCTTCGCTGCCGTAGAAGGCGTCTTCTTCTCGGGGTCGTTTGCC 13464846 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| ||||||| |||||||| ||||||||| | |||||||| ||||| | Sbjct 13464847 GCTATATTCTGGCTGAAGAAGAGAGGCCTCATGCCAGGACTCACTTTCTCAAACGAGCTC 13464906 Query 269246 ATAAGCAGGGACGA 269259 || ||||||||||| Sbjct 13464907 ATCAGCAGGGACGA 13464920 Score = 93.3 bits (102), Expect = 1e-13 Identities = 99/127 (78%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 ||| |||| ||||||||| | || || || ||||||| || || ||||| || || Sbjct 13460867 TTCAGTCAGGAGGTACAGGTCCCAGAGGCTCGATGTTTCTATGGCTTCCAAATTCTCATC 13460926 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT-AGATGATAACAA 269028 ||||| |||| || |||||||||||| || |||||||||||||||| ||| ||| ||| Sbjct 13460927 GAAAACGTTCACTCGGAGATGTACAGTTTACTAATAGATACTTATATCAGA-GAT-CCAA 13460984 Query 269029 CGAAAAG 269035 |||||| Sbjct 13460985 AGAAAAG 13460991 >seq1 Length=79790405 Score = 125 bits (138), Expect = 2e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| ||||||| | | || || ||||| ||| | | ||| ||||| || || || || Sbjct 51916191 GTAGACTCTTTCTTAGTGTTGTAATCAGAAAGAATGCGACCATCTTCCAGCTGCTTGCCT 51916250 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| || ||||| ||||| | ||||||||||| ||||| || || Sbjct 51916251 GCAAAGATGAACCTCTGCTGGTCAGGGGGTATGTCCTCTTTATCCTGGATCTTGGCCTTC 51916310 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| || | ||| || || || ||||||||||| || || ||||| Sbjct 51916311 ACATTCTCAATGGTGTCACTGGGCTCTACCTCTAGGGTGATTGTCTT 51916357 >seq215 Length=1997539 Score = 123 bits (136), Expect = 6e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || |||||||| |||||||| |||||||| ||||| || ||| Sbjct 1382440 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 1382499 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||||| || || ||||| ||||| ||||| || || || || ||||| || Sbjct 1382500 ACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTGATGGTTTTCCCCGTAAGGGTC 1382559 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || |||||||| ||| Sbjct 1382560 TTCACGAAAATCTGCATGTTG 1382580 >seq102 Length=8054149 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 104435 CTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACG 104494 ||||| || ||||| || || || || || ||||| |||||||| || ||||| || | | Sbjct 3738564 CTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATG 3738505 Query 104495 GTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATC 104554 || || || || || ||||| || || || ||||||||||| | ||||| || || ||| Sbjct 3738504 GTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATC 3738445 Query 104555 TGCATTTTGTGT 104566 |||||| | ||| Sbjct 3738444 TGCATTGTCTGT 3738433 >seq86 Length=10151807 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 |||| ||| || | || ||||| ||||| | | ||||| ||||| || || ||||| Sbjct 3693162 TCTTCCTGGATGCTGTAATCAGAAAGAGTGCAGTCATCTTCCAGTTGCTTGCCGGCAAAG 3693221 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || |||||| | || || || ||||||||||| ||||| | | ||||| Sbjct 3693222 ATGAGTTGCTGTTGGAGGGCGGGGATGCCCTCTTTATCCTGGATCTTGACCCTGACATTC 3693281 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 | | ||| || || ||||| |||||||| || || ||||| || || || ||||||| Sbjct 3693282 TGAATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTTTTTATT 3693341 Query 104549 AATATCTGCATTTTG 104563 || || ||| |||| Sbjct 3693342 AAAATTTGCCATTTG 3693356 >seq29 Length=19544038 Score = 93.3 bits (102), Expect = 1e-13 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || | |||||||| || |||||||| || |||||||| || ||||| Sbjct 9852219 CCATCTTCCAGCTGCTGACCAGCAAAGATCAGCCTCTGCTGCTCAGGAGGAATCCCTTCC 9852278 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTA 104492 |||||||| ||||| || ||||||||||||| Sbjct 9852279 TTATCCTGGATCTTGGCCTTTACATTTTCTA 9852309 >seq31 Length=19353835 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| | |||||||| | ||| || ||||||||||| || ||| Sbjct 14184615 GTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTATGGCCATCTTCTAGTTGCTTACCA 14184674 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||||| || || ||||| |||||||||| |||| ||| |||||||| || || Sbjct 14184675 GCAAAGATCAGACTCTGCTGATCAGGAGAAATTCTTTCCTTATCCTGGATTTT 14184727 >seq241 Length=1258670 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 |||| || || ||||||||||| | |||||||| || |||||||| |||||| | ||| Sbjct 25866 CTTCCAGCTGCTTTCCAGCAAAGACCAGCCTCTGCTGGTCAGGAGGAATTCCTGCCTTAG 25925 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTA 104492 |||| ||||| || |||||| |||||| Sbjct 25926 CCTGGATCTTGGCCTTTACACTTTCTA 25952 >seq24 Length=20494602 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || |||||||| | ||| || ||||| | || | | | Sbjct 852549 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGTGGCCATCTTCCAACTGATCACTA 852490 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 | | | |||||||| ||||||||||| |||||||| ||||||| ||||| || ||| Sbjct 852489 G---AGAGCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTATATCTTGGCCTTT 852433 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 | |||||||| || | ||||| |||| || | || ||||| | | ||| ||| Sbjct 852432 ATATTTTCTAGAGTGCCTGAGGGTTCAACCTGGAGCATGATGGTCTTCTCTGCAAGGGTT 852373 Query 104543 TTTACAAATATCTGCATTTTG 104563 | || |||||||| ||| Sbjct 852372 TCCTTGAAAATCTGCATCTTG 852352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151081461758672