Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq270 111 1e-19 >seq270 Length=930488 Score = 111 bits (122), Expect = 1e-19 Identities = 137/185 (74%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 5315 ATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGT-CGCTGTT 5373 || ||||| || || ||||| || || | || || || || || ||||| | | || || Sbjct 655650 ATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTTTACTTCAAACTTCTCT-TT 655708 Query 5374 TCCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGC 5433 ||| |||||||||||||| || || ||||| |||| || |||||||| || || || || Sbjct 655709 TCCAAAGTTAAACAGCACAACACCAACATTTCCTCTATAATCTTCGTCTATGACACCGGC 655768 Query 5434 GCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCA 5493 ||||| || || ||||| || || || | ||| || ||||| |||| | ||| || || Sbjct 655769 TCCCACATCTATGAAGTGCTTTACTGCCAAGCCAGAGCGTGGAGCTACTCTTCCATAACA 655828 Query 5494 ACCAG 5498 |||| Sbjct 655829 CCCAG 655833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447630156630080