Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq270 111 1e-19 seq95 87.8 2e-12 >seq270 Length=930488 Score = 111 bits (122), Expect = 1e-19 Identities = 195/284 (69%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 || ||||| ||||| || || | ||| ||||| || || ||||| | || ||||| Sbjct 655575 CCAGTGGAGCCGAAGCCTCCCGAGCCCCTTTCAGTGTCATCCAGTGTCTTAACTTCTTCT 655634 Query 5564 ACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACC 5623 | || || | | || || || || ||||| || ||||| || || | ||||| Sbjct 655635 AAGTCCGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTTTACT 655694 Query 5624 TCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCG 5683 || || | | | || ||||| |||||||| || || || || || | || || || Sbjct 655695 TCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAACATTTCCTCTATAATCTTCG 655754 Query 5684 TCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCC 5743 ||||| || || || ||||| || ||||||||||| || |||| ||| ||||| ||||| Sbjct 655755 TCTATGACACCGGCTCCCACATCTATGAAGTGCTTTACTGCCAAGCCAGAGCGTGGAGCT 655814 Query 5744 ACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 || | || || |||||| |||| |||||| | ||| || Sbjct 655815 ACTCTTCCATAACACCCAGAAGGAACAGCTATCTGAATGTCTGT 655858 >seq95 Length=9356868 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 127162 GGCTATTTAGGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATG 127221 || || || || |||||| | | || || ||||| ||||| ||||| | ||| || ||| Sbjct 743921 GGTTACTTGGGTTGCCAAACCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAGTGATG 743862 Query 127222 CCACAGGCAGAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAG 127281 || |||||||| || ||||| || || || || || || | || ||||| || || ||| Sbjct 743861 CCCCAGGCAGAGAACCACGGCCCAGAAATCAAGGAGCATTTGAACTCCCTAGGAGAGAAG 743802 Query 127282 CTGAAGAC 127289 |||||||| Sbjct 743801 CTGAAGAC 743794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429941796168608