Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq68 91.5 1e-13 >seq68 Length=11249547 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| |||||||| |||| ||||||||||| || || || || || ||||| Sbjct 11211883 CATATCTTTGTAGTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTC 11211942 Query 25833 TCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || || | | |||| | || ||| | |||||||| |||| ||| |||||||| | Sbjct 11211943 CCCTTCCTGTC-GTGCAGAGAATCCCAGGCTGTCCAAAAAATCTCGGGACCCATTGGCAT 11212001 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||| || | || ||||| ||| || ||||| | |||||||| || Sbjct 11212002 CCCATATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGAACC 11212050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340048539646332