Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq40 140 5e-28 seq123 118 2e-21 >seq40 Length=17264671 Score = 140 bits (154), Expect = 5e-28 Identities = 202/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || || || || || ||||| |||||| |||||||| || || ||| | |||| |||| Sbjct 16703577 AAAGGGCAGCCCTTAACGTTATTACAGATGAGAGACTGAATTGTGGCAGTGTTGATGATC 16703518 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 ||| ||||| ||||| || || ||||| || |||||||| || || |||||| Sbjct 16703517 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGAGGAGAACAGATGGGA 16703458 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| || ||||| | ||| || || || || || || | ||| |||| || ||| Sbjct 16703457 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 16703398 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 || || | ||||| ||||||||||||| | | | |||| ||||| || || ||| Sbjct 16703397 ATAGCATCTGGACGAGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCAATG 16703338 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || | ||| ||||| | | || || || ||||| | |||||| Sbjct 16703337 TCACTGTAGAGGGCTTTCAACTCTGCGGCCATTTCTGTCTCTCCT 16703293 Score = 138 bits (152), Expect = 2e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 9657 CCATTCTGGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGAT 9716 ||| || ||||| || |||| || ||||| |||||||||||||| || | |||||||| Sbjct 16702013 CCACTCAGGATGCTCCTGTTTAAGCACATCACACACTCTGTTGTGCTCTCGCAGCCAGAT 16701954 Query 9717 AGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACG 9776 ||||| |||||||| |||||||||||||| ||||| |||| || || ||||| | || Sbjct 16701953 GGTAGCATACATCATCAGACCAGGCACCAGACCAAAGACCTCCTGCCCCACAGCGAACCG 16701894 Query 9777 CATATTTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGG 9836 | | || || | ||||| |||||||| | ||||||| |||||||| | ||| Sbjct 16701893 TAGGTGCTCAGGGGTGTGAGGAGGGTAGATCATCTCCACCTGGGTGTCTTTGACTGTGGG 16701834 Query 9837 GGGATACATTTCACCGTCAAT 9857 ||||||| || || |||| Sbjct 16701833 AGGATACACCTCTCCACCAAT 16701813 Score = 114 bits (126), Expect = 2e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||| |||||| | || ||||| | ||| ||| | || Sbjct 16700679 TCTTACCCCATGGCCCAGTCCTCGGGTGAAGCCAGGTCCTCGTTTCTGATCTGTCTTGAA 16700620 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || || || || ||| |||| || |||||||| | || ||||| |||||||| Sbjct 16700619 AAACTGATGAGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTCGTGCCTTGGGGATC 16700560 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | |||| |||||| |||||||| ||| | | || ||| || || | Sbjct 16700559 AGGGATGAACTTTCTCCTGAGAAGAACTTTTTCCAGAACTTCTTTCGAATCAGGAAGCTC 16700500 Query 10208 ttttttACCTG 10218 || || |||| Sbjct 16700499 CTTATTTCCTG 16700489 Score = 96.9 bits (106), Expect = 5e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 10287 TCACCTTTGAC-CCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGC 10345 |||||||| || |||||| |||||||| || || | || || ||||| || | || | Sbjct 16699962 TCACCTTTCACACCCAAG-GGAGTTGGGCAGTCATCAGCCACAGGAGGAAGGACTCTGGT 16699904 Query 10346 GTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGAT 10405 || |||||||| |||||||||||||||||| || ||| | |||| | ||||| | Sbjct 16699903 ATAGTAGGAGAGGTTGGAGAAAGCTTCCCAGTTTTTGTAACCATAGTGTACATTGTAAGT 16699844 Query 10406 GGGAGGGCTGTCAATCAAATCGGATCT 10432 || || ||||||||||||| ||||| Sbjct 16699843 TGGTGGACTGTCAATCAAATGTGATCT 16699817 >seq123 Length=6821335 Score = 118 bits (130), Expect = 2e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || ||||| |||||||| ||||| || | || || || ||| ||| Sbjct 5357464 AAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATATTCTGGAGAACAAATGGGATTC 5357523 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | ||| || ||||||||||| ||||| || | ||| | || ||||| || |||||| Sbjct 5357524 CCAAGGAGACCCTTGAGGGAAAAGGGAGCTCCAATCTCTAACATACTCTCCCCAAAGATG 5357583 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| || |||||||| || | || | ||| ||||| | ||| |||||||| Sbjct 5357584 GAGTTGGGCTGGCACTTTTCCAGCAGCAGCCCTGGGTAGAACTCTAAAGCGTCGATGTCA 5357643 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 | ||| || || || || || || || || || || |||| Sbjct 5357644 CTGTATAGCTCCTCCAGCTCAGCGGCCATCTCTTTCTCCCCTG 5357686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708334525664960