Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq270 113 4e-20 seq88 107 2e-18 seq11 102 7e-17 seq15 100 3e-16 seq44 93.3 4e-14 seq34 87.8 2e-12 >seq270 Length=930488 Score = 113 bits (124), Expect = 4e-20 Identities = 241/358 (67%), Gaps = 8/358 (2%) Strand=Plus/Plus Query 43553 TCCGGTGGACCCGAATCCCGCGGATCCGCGTTCCGTTTCTTCAATGTCCAGTTCCGGATC 43612 ||| ||||| ||||| || | || || | ||| || || || |||| | | | Sbjct 655574 TCCAGTGGAGCCGAAGCCTCCCGAGCCCCTTTCAGTGTCATC------CAGTGTCTTAAC 655627 Query 43613 TTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTCCCTG 43672 |||||| | || || ||| | ||| ||||||||||||||| || |||| || || | Sbjct 655628 TTCTTCTAAGTCCGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTT 655687 Query 43673 CAGCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTCCCCTATA 43732 || | ||| | | || | ||| || ||||| || || || ||||| ||||| Sbjct 655688 TTTTACTTCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAACATTTCCTCTATA 655747 Query 43733 GTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTGATCT 43792 ||||||||||| || || || || || ||||| ||| |||||||||||| || | Sbjct 655748 ATCTTCGTCTATGACACCGGCTCCCACATCTATGAAGTGCTTTACTGCCAAGCCAGAGCG 655807 Query 43793 GGCGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTTTTACGA- 43851 | || || || |||||| || ||| || |||| | | ||||| ||||| || | Sbjct 655808 TGGAGCTACTCTTCCATAACACCCAGAAGGAACAGCTATCTGAATGTCTGTTTTCACAAT 655867 Query 43852 GGCTGTAGCCTTTGGGTTCTATGGCCAAATCTTGGGCGCTGTACAGATCGTACCCGGC 43909 |||| | || | ||| ||| | |||| | ||| |||||||| ||||| || || Sbjct 655868 GGCTTTCTCC-ATAGGTGGTATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCGC 655924 >seq88 Length=9234670 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | ||| | || || |||||||| | ||| || || || ||| | Sbjct 4564067 TCTCAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCC 4564126 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||||| || || ||||||| | || ||||| || |||||||| ||||| || Sbjct 4564127 ATCTTCCAGCTTCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTT 4564186 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | |||||| | | | || || || | |||||| Sbjct 4564187 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGAT 4564246 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||||| || ||||| || ||||| || ||||||||| Sbjct 4564247 GGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATG 4564283 >seq11 Length=24937227 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| ||||| || || || | ||| ||||| | |||| | ||| ||| Sbjct 14395183 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 14395242 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || ||||||| | || ||||| || || || || || || || || | Sbjct 14395243 AGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 14395302 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| ||| |||||| | | || || || | |||||||| || Sbjct 14395303 ATCTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 14395362 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||| ||||||||||||| Sbjct 14395363 CCGGTCAGGGTCTTCACGAAGATCTGCATGC 14395393 >seq15 Length=24491037 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94854 CCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGT 94913 |||||||||| || || |||| || | ||| ||||| || || ||||| |||| || | Sbjct 10712838 CCTCCAGCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGGTGGAATGCCTTTCTTAT 10712897 Query 94914 CATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGG 94973 | | || || |||||||| ||| |||||| | | ||||| |||| ||||||| Sbjct 10712898 CTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGG 10712957 Query 94974 TTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || || || || |||||||||||||||||| Sbjct 10712958 TCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 10712992 >seq44 Length=14409287 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| |||||| | || || || || ||||| || || || ||| || |||||| Sbjct 3701611 CACCAGGTGCAAGGAGGACTCTTTCTGGACGTTGTAGTCTGACAGGGTGCGGGCATCCTC 3701670 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || |||| || | ||| |||| || || ||||| ||||| || | | Sbjct 3701671 CAGCTGCTTGCCAGCAAATATCAGTCTCTGCTTGTCAGGTGGAATGCCTTCCTTATTTTG 3701730 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || |||||||| || |||||| | | | ||| |||| |||||| || Sbjct 3701731 GATCTTGGCCTTGACATTCTTGATGGTGTCACTGGGCTGGACCTCAAGATTGATGGCCTT 3701790 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || | || || |||||||||||||||||| Sbjct 3701791 GCCCATCAGGGTCTTCACAAAGATCTGCATG 3701821 >seq34 Length=19385306 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| || || || || || | ||| || || || || | | |||||| Sbjct 7139856 CACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTTTGGCCATCCTC 7139797 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| || || |||| || | ||| ||||| || | ||||| ||||| || | | Sbjct 7139796 CACCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGATGGAATGCCTTCCTTATATTG 7139737 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || |||||||| ||| |||||| | | |||| |||| |||||||| || Sbjct 7139736 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAACTCAAGAGTGATGGTCTT 7139677 Query 94978 TCC-AGTAAGAGTTTTCACAAAGATCTGCATG 95008 || | ||| || |||||||||||||||||| Sbjct 7139676 GCCCAACAAG-GTCTTCACAAAGATCTGCATG 7139646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448170811398240