Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq166 159 5e-35 seq7 150 3e-32 seq236 147 3e-31 seq37 129 9e-26 >seq166 Length=3799537 Score = 159 bits (176), Expect = 5e-35 Identities = 180/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||||||| || ||||||||||| || ||||| || ||||||| ||||| Sbjct 2190553 TCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGCTTGGCTCGACGTGG 2190612 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| |||||||| ||||||| | |||| || |||| || | ||| ||||| | || Sbjct 2190613 TGGTGTCAAGCGCATCTCTGGCCTCATCTACGAGGAGACCCGCGGTGTGCTGAAGGTGTT 2190672 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| |||| || || || ||| |||||||||||||| || ||||| || Sbjct 2190673 CCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGAGCACGCTAAGCGCAAGACCGT 2190732 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| ||||||| | ||||| || | || || || ||||| | | ||||| || || Sbjct 2190733 CACCGCCATGGACGTAGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTGTATGGCTTCGG 2190792 Query 16693 A 16693 | Sbjct 2190793 A 2190793 >seq7 Length=28733031 Score = 150 bits (166), Expect = 3e-32 Identities = 194/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | || || || |||||||| || ||||||||||| || || Sbjct 28361114 CGCCAAGCGTCACCGCAAAGTCCTCCGTGACAACATCCAGGGGATCACCAAGCCCGCCAT 28361173 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 28361174 CCGCCGCCTGGCCCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTTATCTACGAGGAGAC 28361233 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 28361234 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGGA 28361293 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 28361294 GCACGCCAAGCGCAAGACCGTCACTGCCATGGACGTGGTCTACGCGCTCAAGCGACAGGG 28361353 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || || || || ||||| Sbjct 28361354 CCGCACGCTCTACGGCTTCGGCGGTTAA 28361381 Score = 150 bits (166), Expect = 3e-32 Identities = 194/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || |||||||| || || ||||||||||| || || Sbjct 28479329 CGCCAAGCGCCACCGCAAAGTCCTCCGCGATAACATTCAGGGCATCACCAAGCCCGCCAT 28479388 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 28479389 CCGCCGCCTGGCCCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 28479448 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 28479449 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGGA 28479508 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 28479509 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 28479568 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || || || || ||||| Sbjct 28479569 CCGCACGCTCTACGGCTTCGGCGGTTAA 28479596 Score = 147 bits (162), Expect = 3e-31 Identities = 195/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | || || || |||||||| || || |||||||| || || Sbjct 28491353 CGCCAAGCGTCACCGCAAAGTCCTCCGCGACAACATCCAGGGCATTACCAAGCCCGCCAT 28491294 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 28491293 CCGCCGCCTGGCCCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 28491234 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | || || ||| ||| |||| || || || ||| || || Sbjct 28491233 CCGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGGA 28491174 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 28491173 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 28491114 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | | || || || || | |||||| Sbjct 28491113 CCGCACGCTCTACGGCTTCGGCGGATAATCT 28491083 Score = 145 bits (160), Expect = 1e-30 Identities = 193/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 28308092 CGCCAAGCGCCACCGCAAAGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 28308033 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 28308032 CCGCCGCCTGGCCCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 28307973 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | || || ||| ||| |||| || || || ||| || || Sbjct 28307972 CCGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGGA 28307913 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 28307912 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 28307853 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | | || || || || ||||| Sbjct 28307852 CCGCACGCTCTACGGCTTCGGCGGTTAA 28307825 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 28453863 CGCCAAGCGGCACCGCAAAGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 28453922 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 28453923 TCGCCGCCTGGCCCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTTATCTACGAGGAGAC 28453982 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 28453983 CCGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGGA 28454042 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | || || || | || || || || Sbjct 28454043 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGG 28454102 Query 16672 CCG 16674 ||| Sbjct 28454103 CCG 28454105 >seq236 Length=1459171 Score = 147 bits (162), Expect = 3e-31 Identities = 189/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || ||||||||||| || ||||||||||| || || Sbjct 947609 CGCCAAGCGCCACCGCAAAGTCCTCCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 947668 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 947669 TCGCCGCCTGGCCCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTTATCTACGAGGAGAC 947728 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 947729 CCGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGGA 947788 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 947789 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 947848 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | | || || || || Sbjct 947849 CCGCACGCTCTACGGCTTCGG 947869 Score = 147 bits (162), Expect = 3e-31 Identities = 194/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 1233454 CGCCAAGCGGCACCGCAAAGTCCTCCGCGACAACATCCAGGGGATCACCAAGCCCGCCAT 1233395 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 1233394 CCGCCGCCTGGCCCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 1233335 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | || || ||| ||| |||| || || || ||| || || Sbjct 1233334 CCGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGGA 1233275 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 1233274 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 1233215 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 ||| | | | || || ||||| | |||| Sbjct 1233214 CCGCACGCTCTACGGCTTTGGTGGCTAAT 1233186 >seq37 Length=16966535 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||| || || |||||||| || ||||| ||||| || || Sbjct 4305440 CGCCAAGCGCCACCGCAAGGTTCTGCGCGACAACATCCAGGGCATCACGAAGCCCGCCAT 4305381 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| || || || ||||| || |||| || || |||| || |||| Sbjct 4305380 CCGGCGCTTGGCTCGGCGCGGCGGCGTCAAACGCATCTCGGGGCTGATCTACGAGGAGAC 4305321 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | || | || || ||| ||| |||| || || || ||| ||||| Sbjct 4305320 TCGCGGTGTGCTCAAAGTGTTTCTGGAGAACGTGATCCGCGACGCGGTCACCTACACCGA 4305261 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 4305260 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 4305201 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | |||| || || || Sbjct 4305200 CCGCACTCTTTACGGCTTCGG 4305180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79055557028412