Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq35 91.5 2e-13 >seq35 Length=17774785 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 21128 TAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTT 21187 |||||||| ||||| || | ||| ||||||||| ||| | ||| | | | | Sbjct 13474567 TAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCCGCCATGACTGCAAAACGC 13474508 Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247 ||||| ||| ||||| ||| || || |||||||| || ||||| ||||| || |||| Sbjct 13474507 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 13474448 Query 21248 ATAAAATCAAATGGATTTTC 21267 ||||||||||| |||||||| Sbjct 13474447 ATAAAATCAAAGGGATTTTC 13474428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531757958040160