Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq44 122 1e-22 seq270 98.7 1e-15 seq69 95.1 2e-14 >seq44 Length=14409287 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || || |||||||| ||||| ||||| |||||||| || |||||||| || ||||| | Sbjct 13238029 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATG 13237970 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||| ||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 13237969 GACTCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 13237910 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 13237909 CTGTTTCTTACACCATA 13237893 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 ||||||| || || || || | || || ||||| ||||| || || || || || || | Sbjct 13234381 CATATGTCTCATAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCAT 13234322 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||| ||||| ||||| | |||||| | || ||||| |||| |||||||||| Sbjct 13234321 AATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGAGCTTCTGGGCTCTCAAATGGAT 13234262 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 | | | | || || || || |||| ||||| || ||||| || || || | ||| | Sbjct 13234261 ATCTCATCAAGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGC 13234202 Query 62755 TCTTATTAGA 62764 ||||| || Sbjct 13234201 GTTTATTTGA 13234192 >seq270 Length=930488 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 31099 ACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCA 31158 |||||||| | || |||||| | || |||| | | || ||||| || |||| ||| || Sbjct 655626 ACTTCTTCTAAGTCCGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCT 655685 Query 31159 GTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTA 31218 | ||||| | |||| | ||||||| |||| || | || || | ||||| ||| Sbjct 655686 TTTTTTACTTCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAACATTTCCTCTA 655745 Query 31219 TAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGAC 31275 |||||||||||||| |||||| |||| | ||| || | |||| | || ||||| Sbjct 655746 TAATCTTCGTCTATGACACCGGCTCCCACATCTATGAAGTGCTTTACTGCCAAGCCAGAG 655805 Query 31276 CTAGGAGCTATTCTACCATAGCA 31298 | ||||||| ||| ||||| || Sbjct 655806 CGTGGAGCTACTCTTCCATAACA 655828 >seq69 Length=12026347 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 33289 TGTTTAAACATCAAACATGCGAAA-TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTC 33347 ||||| |||||| || || | | || ||||||| |||||||||||| ||||| || || Sbjct 4703497 TGTTTGGACATCAGGCA-GCTAGAGTCACAGTGCAAACCCTCGTCTCTGCTAATAAGCTC 4703439 Query 33348 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA 33407 |||||||| || || |||||| || || | || || ||||| || | || ||| Sbjct 4703438 TTTGGAAAAGCTGCATCTGGGCATCAGTCCTTGTTTCTTGAGCCAGAACACTGATATGAA 4703379 Query 33408 TGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 || ||||||||||||||||||| || | |||| ||| Sbjct 4703378 AGAACCAGAAAAGAAGATTCCTTTAACAGTGGCAAGGGC 4703340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622779907529440