Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq74 96.9 2e-15 seq2 93.3 3e-14 >seq74 Length=10783063 Score = 96.9 bits (106), Expect = 2e-15 Identities = 77/93 (83%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||| |||||||||||||||| || |||||||| ||||| || |||||| | Sbjct 6194248 AAGCCCGTTTCCTTGGCTGTGGTTTCCCTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 6194307 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | || | ||||||| ||||||||||||||||| Sbjct 6194308 TTATACATTCATGCATGTCACTAATTAGATGAC 6194340 >seq2 Length=60928133 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||||||||||||||||||||||||||| | | ||||||||||| || |||||||| | Sbjct 46294850 TCTCTCTTCAAAGTTCTTTTCAACTTTCCTTTATGGTACTTGTTCACTGTCGGTCTCTTG 46294791 Query 20008 GTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 46294790 CCAGTATTTAGCCTTA 46294775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334859498681204