Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq44 122 1e-22 seq270 102 1e-16 >seq44 Length=14409287 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || || |||||||| ||||| ||||| |||||||| || |||||||| || ||||| | Sbjct 13238029 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATG 13237970 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||| ||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 13237969 GACTCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 13237910 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 13237909 CTGTTTCTTACACCATA 13237893 Score = 105 bits (116), Expect = 8e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 13220971 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 13220912 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | ||||| | || || ||| | ||||| |||||||| |||| Sbjct 13220911 TGGCATAGTCAGGGTGCTTCGTAGTCAAGGTTGCAGCTGTCTCGGCAGCCAGAGTATCCA 13220852 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| |||| | |||||||| || ||||| Sbjct 13220851 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCAT 13220806 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 || |||| ||| | || | || || ||||| || | |||||||| || ||||||||| Sbjct 13226688 CTGGACAGTTGTGGGCGGTTGGTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTAAAC 13226629 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || || |||||||| || ||||| || ||||| || | || ||||| || |||||| Sbjct 13226628 CACTTCTCAGAAAGCAGGTTGTATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATT 13226569 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 || || | || | ||| ||||| ||||| ||||||||| Sbjct 13226568 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 13226530 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 ||||||| || || || || | || || ||||| ||||| || || || || || || | Sbjct 13234381 CATATGTCTCATAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCAT 13234322 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||||||| ||||| ||||| | |||||| | || ||||| |||| |||||||||| Sbjct 13234321 AATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGAGCTTCTGGGCTCTCAAATGGAT 13234262 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | | | | || || || ||||||| ||||| || ||||| || || || | ||| | Sbjct 13234261 ATCTCATCAAGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGC 13234202 Query 62610 TCTTATTAGA 62619 ||||| || Sbjct 13234201 GTTTATTTGA 13234192 >seq270 Length=930488 Score = 102 bits (112), Expect = 1e-16 Identities = 207/305 (68%), Gaps = 7/305 (2%) Strand=Plus/Plus Query 30456 ACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCC 30515 ||||||| | || |||||| | || |||| | | || ||||| || |||| ||| || Sbjct 655626 ACTTCTTCTAAGTCCGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCT 655685 Query 30516 GTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTA 30575 | ||||| | || | ||||||| |||| || | || || | |||||| ||| Sbjct 655686 TTTTTTACTTCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAACATTTCCTCTA 655745 Query 30576 TAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGAC 30632 |||||||||||||| |||||| |||| | ||| || | |||| | || ||||| Sbjct 655746 TAATCTTCGTCTATGACACCGGCTCCCACATCTATGAAGTGCTTTACTGCCAAGCCAGAG 655805 Query 30633 CTAGGAGCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATT 30692 | ||||||| ||| ||||| || ||| | | || ||| ||||| || | Sbjct 655806 CGTGGAGCTACTCTTCCATAACACCCAGAAGGAACAGCTATCTGAATGTCTGTTTTCA-- 655863 Query 30693 AATTGTCTTTCTCC--TGGAGGGATAGTATAATCATAAGCGCTATATAAATCATATCCGG 30750 | || |||||||| || || || ||||||||||| || || || | || || || | Sbjct 655864 CAATGGCTTTCTCCATAGGTGGTATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCG 655923 Query 30751 CAGCG 30755 ||||| Sbjct 655924 CAGCG 655928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633461838126400