Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq11 174 3e-38 seq88 152 9e-32 seq15 152 9e-32 seq34 143 5e-29 seq44 132 9e-26 seq33 109 1e-18 seq215 98.7 2e-15 seq2 98.7 2e-15 seq102 96.9 6e-15 seq19235 87.8 3e-12 seq117 86.0 1e-11 >seq11 Length=24937227 Score = 174 bits (192), Expect = 3e-38 Identities = 179/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||||| || || | ||||| | |||| ||| || || |||||||| |||||||| || Sbjct 14395158 TTAATAGCCACCCCTGAGGCGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTA 14395217 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 ||| || || || | |||||||| | |||||| || || || ||||||| || ||||| Sbjct 14395218 ATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTC 14395277 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 ||| || ||||| ||||| || || ||||| ||||||||| ||||||||||| | Sbjct 14395278 GGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTTTCGATGGTGTCACTGGG 14395337 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||| ||||||||| || || || |||||||| ||||| |||||||| Sbjct 14395338 CTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 14395391 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || ||||||| || |||||||| || ||||| ||||| || || ||||| ||| Sbjct 14396119 CCTGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCC 14396178 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||| ||||||||||| | || || || | ||||||||| || || || || Sbjct 14396179 TTGACGTTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGA 14396238 Query 68442 GTCTTGACGAATATCTGCATTATG 68465 ||||| ||||| || |||||| || Sbjct 14396239 GTCTTCACGAAGATTTGCATTTTG 14396262 >seq88 Length=9234670 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| || | ||| || |||||||| ||||||||||| || || || Sbjct 4564056 CCACCACGAAGTCTCAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 4564115 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | || ||| || || || || || || || ||||| || ||| Sbjct 4564116 AACGTGCGGCCATCTTCCAGCTTCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 4564175 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| ||||| || || || ||||| | | ||| || Sbjct 4564176 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 4564235 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||| ||||| |||||||| ||||| |||||||| Sbjct 4564236 TCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 4564282 >seq15 Length=24491037 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||| | | |||| || || ||||||||||| |||||||| || | || Sbjct 10712765 CCCCCACGAAGGTGAAGCACCAGGTATAAGGTGGACTCTTTCTGGATGTTGTAGTTCGAC 10712824 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || | | ||| | || | |||||| || || ||||| ||||| || ||||| |||||| Sbjct 10712825 AGCATGCGGCCACCCTCCAGCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGGTGGA 10712884 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||| ||| ||||| ||||| |||||||| |||||||||||| | || || Sbjct 10712885 ATGCCTTTCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 10712944 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || |||||||| || || |||||||| Sbjct 10712945 TCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 10712991 >seq34 Length=19385306 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | |||| || | ||||||||||| |||||||| || || || Sbjct 7139873 CCCCCGCGAAGACGAAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAC 7139814 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || ||||| || | |||||| || || ||||| ||||| || ||||| | |||| Sbjct 7139813 AGGGTTTGGCCATCCTCCACCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGATGGA 7139754 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| | ||| ||||| |||||||| |||||||||||| | || | Sbjct 7139753 ATGCCTTCCTTATATTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAAC 7139694 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||| | |||||| || || |||||||| Sbjct 7139693 TCAAGAGTGATGGTCTTGCCCAACAAGGTCTTCACAAAGATCTGCAT 7139647 >seq44 Length=14409287 Score = 132 bits (146), Expect = 9e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 68241 CGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTC 68300 |||||||| | |||| ||| | | ||||||||| |||| ||| || || || || || Sbjct 3701600 CGAAGGCGAAGCACCAGGTGCAAGGAGGACTCTTTCTGGACGTTGTAGTCTGACAGGGTG 3701659 Query 68301 CTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCT 68360 | |||| || | |||||| || || ||||| ||||| || | ||| |||||||||||| Sbjct 3701660 CGGGCATCCTCCAGCTGCTTGCCAGCAAATATCAGTCTCTGCTTGTCAGGTGGAATGCCT 3701719 Query 68361 TCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAG 68420 ||||| | ||| ||||| |||||||| || ||||||||| | | || || | Sbjct 3701720 TCCTTATTTTGGATCTTGGCCTTGACATTCTTGATGGTGTCACTGGGCTGGACCTCAAGA 3701779 Query 68421 GTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || ||| | |||||||| || || |||||||| Sbjct 3701780 TTGATGGCCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 3701820 >seq33 Length=18013292 Score = 109 bits (120), Expect = 1e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||| | || || | ||| | ||||||||||| ||||||| || || | Sbjct 16639541 CCCCCACGAAGGTGAAACACGATGTGCAAGGTGGACTCTTTCGGGATGTTGTAGTCCAAC 16639482 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || |||| || | |||||| | ||| ||||| || || || ||||| | ||| Sbjct 16639481 AGGGTGTGGTCATCCTCCAGCTGCTTGCTGGCAAATATCAGCCTCTGCTGGTCAGATGGG 16639422 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||| ||||||| ||||| ||||| | |||||| ||| || | ||| | || || Sbjct 16639421 ATGACTTCCTTATCTTGGATCTTGGTCTTGACATTCTCAATAGAGTCACTGGGCTCGACC 16639362 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCT 68457 || | |||||||| || ||| | |||||||| || || |||| Sbjct 16639361 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCT 16639319 >seq215 Length=1997539 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || || || || ||||| || ||||| |||||||| || || ||||| ||||| Sbjct 1382440 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 1382499 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 || || || ||||| | | ||| || || | ||||||||||| ||||| |||||| Sbjct 1382500 ACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTGATGGTTTTCCCCGTAAGGGTC 1382559 Query 68445 TTGACGAATATCTGCAT 68461 || ||||| |||||||| Sbjct 1382560 TTCACGAAAATCTGCAT 1382576 >seq2 Length=60928133 Score = 98.7 bits (108), Expect = 2e-15 Identities = 127/174 (73%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 || || || | |||| ||| ||||||| | ||||| ||||| |||| ||| || | Sbjct 49802721 TTGCCACCACAAAGGTGCAGCGCCAAGTGCAATGTGGA-TCTTTCTGGACGTTGTAGTTC 49802663 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || || ||||| || | |||||| | ||| | || || || || ||||| ||| Sbjct 49802662 GACAGGGTGAGGCCATCCTCCAGCTGCTTGCTGGCAAGTACCAGCCTCTGCTGGTCAGGT 49802603 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || |||||||||| ||||| ||||| |||||||| ||||||||||| ||| Sbjct 49802602 GGGATGCCTTCCTCATCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGCT 49802549 >seq102 Length=8054149 Score = 96.9 bits (106), Expect = 6e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 || || ||||| || || ||||| |||||||| || |||||||||||||| ||| ||| Sbjct 3738564 CTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATG 3738505 Query 68397 GTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATC 68456 ||||| | || || |||| ||||||||| || || || | ||| || ||||| ||| Sbjct 3738504 GTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATC 3738445 Query 68457 TGCATT 68462 |||||| Sbjct 3738444 TGCATT 3738439 >seq19235 Length=1210 Score = 87.8 bits (96), Expect = 3e-12 Identities = 150/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 || || || ||| || ||| ||||||| |||||||| || || || || || ||||| Sbjct 819 CAGTAACAGGTGCAGGGTGTACTCTTTCTGGATGTTGTAGTCAGACAGGGTGGGGCCATC 878 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 | | |||||| | || || || || || ||||| |||| |||||||||||||| Sbjct 879 CTTCAGCTGCTTGTCAGC-AACATAAGCTACTGCTGGTCCAGTGGGATGCCTTCCTTGTC 937 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGG 68427 || || || ||||||| ||| ||||| || |||| || || | | || ||||| Sbjct 938 TTCGATTTTGGCCTTGATATTCTCCATGGTCTC-ACTGAGCTCAACCTTGAGGGCGATGG 996 Query 68428 TTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || ||| | ||| |||| | ||| || |||| Sbjct 997 TCTTGCCCATCAGGATCTTCATGAAGATAGGCAT 1030 >seq117 Length=7341999 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 84451 AGAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 84510 ||||||||||| |||||||||||| ||||| || ||||||| || ||||||||||| Sbjct 3494304 AGAGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTT 3494363 Query 84511 CGAGCCCCACATCGGGC 84527 |||||||||| | |||| Sbjct 3494364 CGAGCCCCACGTTGGGC 3494380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921374898304480