Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq35 118 2e-21 >seq35 Length=17774785 Score = 118 bits (130), Expect = 2e-21 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||||||||| | ||||| || ||| ||||||||||||| | || ||| | || |||| Sbjct 13464797 TGGTAGCCTTCGCTGCCGTAGAAGGCGTCTTCTTCTCGGGGTCGTTTGCCGCTATATTCT 13464856 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| || ||||| |||||||| ||||| ||||| |||||||||||| Sbjct 13464857 GGCTGAAGAAGAGAGGCCTC-ATGCCAGGACTCACTTTCTCAAACGAGCTCATCAGCAGG 13464915 Query 42825 GACGAGG 42831 ||||||| Sbjct 13464916 GACGAGG 13464922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944085597707840