Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq68 96.9 3e-15 >seq68 Length=11249547 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 ||||| || | || |||| ||| || || | |||| ||||||||||||||| || || Sbjct 11209799 AGACCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGC 11209858 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || |||| ||||| ||||| |||||||| || || || || || ||||| || | | Sbjct 11209859 ACGCCCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTACC 11209918 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 ||||| |||||||| | || || || || || ||||||| Sbjct 11209919 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCA 11209961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441254269334560