Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq11 113 5e-20 seq12 95.1 1e-14 seq309 91.5 2e-13 seq236 91.5 2e-13 seq158 91.5 2e-13 seq102 91.5 2e-13 seq28 91.5 2e-13 seq178 87.8 2e-12 seq150 87.8 2e-12 seq88 87.8 2e-12 seq263 82.4 8e-11 >seq11 Length=24937227 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || |||||||||| ||||| || | || || |||||||| || || || Sbjct 14395200 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 14395259 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||||||||||||||| || | || |||||| ||| ||| || |||| | Sbjct 14395260 GATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTT 14395319 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 14395320 TTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 14395379 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 14395380 GAAGATCTGCAT 14395391 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 || |||||| || | | |||||||||| ||||||||||||||||||||| |||||||| Sbjct 8081623 ATCTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 8081682 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 8081683 CACTATACTAACGAGGA 8081699 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 42069 CCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT 42128 || || || ||||||||||||||||||| || | || |||||| ||| ||| || Sbjct 14396119 CCTGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCC 14396178 Query 42129 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGC 42188 |||| | | | ||||| || | ||||| || | |||||||| ||||| || || Sbjct 14396179 TTGACGTTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGA 14396238 Query 42189 GTCTTTACAAAGATTTGCATTTTCAC 42214 ||||| || |||||||||||||| || Sbjct 14396239 GTCTTCACGAAGATTTGCATTTTGAC 14396264 >seq12 Length=25144588 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 6912941 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 6913000 Query 57066 ATACTACCGAGGATT 57080 |||||| |||||||| Sbjct 6913001 ATACTAACGAGGATT 6913015 >seq309 Length=382471 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 379322 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 379381 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 379382 ATACTAACGAGGA 379394 >seq236 Length=1459171 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1118727 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1118786 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 1118787 ATACTAACGAGGA 1118799 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1090525 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1090466 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1090465 TACTAACGAGGA 1090454 >seq158 Length=4249057 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 37839 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 37780 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 37779 ATACTAACGAGGA 37767 >seq102 Length=8054149 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3721272 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3721213 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 3721212 TACTAACGAGGAT 3721200 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 3723740 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 3723681 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 3723680 ATACTAACGAGGA 3723668 >seq28 Length=19452151 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 19419206 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 19419265 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 19419266 ATACTAACGAGGA 19419278 >seq178 Length=3274853 Score = 87.8 bits (96), Expect = 2e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| ||||||| |||||||||| ||||||| Sbjct 1743606 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCATCACTATACTAACGAGGAT 1743665 Query 57080 T 57080 | Sbjct 1743666 T 1743666 >seq150 Length=4742123 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| | || | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 223674 TCTCCCCATCAGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 223733 Query 57066 ATACTACCGAGGA 57078 |||||| | |||| Sbjct 223734 ATACTAACAAGGA 223746 >seq88 Length=9234670 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||| | || | ||| ||||||||| || ||||| |||| || || || | || Sbjct 4564070 CAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCATC 4564129 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || |||| ||||||||| || || || | ||||||||| | || | | ||||| || Sbjct 4564130 TTCCAGCTTCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTATC 4564189 Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175 | ||| || || | | | | ||||| | ||| || |||| ||||||||| Sbjct 4564190 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 4564249 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||| ||||| || ||||| || || || ||||| || Sbjct 4564250 TTTCCCCGTAAGGGTCTTCACGAAAATCTGCATGTT 4564285 >seq263 Length=932407 Score = 82.4 bits (90), Expect = 8e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 57021 ATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 ||||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||| Sbjct 675207 ATCGAACCCCGGTCTCCCGAGTGACAGGCGGGGATACTCACCACTATACTAACGAGGA 675264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543066920202560