Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq11 116 4e-21 seq88 105 7e-18 seq86 95.1 1e-14 seq15 95.1 1e-14 seq83 91.5 1e-13 seq44 87.8 2e-12 seq1 84.2 2e-11 >seq11 Length=24937227 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||||||||| | | ||||| | ||||| ||||||||||| Sbjct 14395195 GTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 14395254 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| |||||||||||||| || || || || || || || || || ||| Sbjct 14395255 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 14395314 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || |||| || ||||| || | || | |||||||||||||| || Sbjct 14395315 ACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 14395374 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 14395375 TTCACGAAGATCTGCAT 14395391 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| | ||||| |||||||||||||| || || || || || || || || || | Sbjct 14396119 CCTGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCC 14396178 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || || || | || |||| || ||||| |||| || | |||||||||||||| | Sbjct 14396179 TTGACGTTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGA 14396238 Query 64424 GTTTTTACGAAAATTTGCATTTT 64446 || || ||||| ||||||||||| Sbjct 14396239 GTCTTCACGAAGATTTGCATTTT 14396261 >seq88 Length=9234670 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| || |||| || || || ||||| |||||||| || | Sbjct 4564055 ACCACCACGAAGTCTCAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 4564114 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| |||| ||| || ||| | || |||| ||||||||| ||||| Sbjct 4564115 CAACGTGCGGCCATCTTCCAGCTTCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 4564174 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | || || || || || Sbjct 4564175 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 4564234 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||| || || || | || || |||||||| ||||| || Sbjct 4564235 CTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATGTT 4564285 >seq86 Length=10151807 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 |||| || ||| ||||||| | | |||| | ||||| || |||||||||||| | Sbjct 3693162 TCTTCCTGGATGCTGTAATCAGAAAGAGTGCAGTCATCTTCCAGTTGCTTGCCGGCAAAG 3693221 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| |||| ||| || || || || ||||| || || || || | | ||| | Sbjct 3693222 ATGAGTTGCTGTTGGAGGGCGGGGATGCCCTCTTTATCCTGGATCTTGACCCTGACATTC 3693281 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 | | || |||| || ||||| |||| || | |||||||||||||| ||||||| Sbjct 3693282 TGAATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTTTTTATT 3693341 Query 64433 AAAATTTG-CATTT 64445 |||||||| ||||| Sbjct 3693342 AAAATTTGCCATTT 3693355 >seq15 Length=24491037 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGG--TGCGCGCG 64288 |||||| || | | || || ||||| || |||||||| | |||| | |||| | Sbjct 10712779 AAGCACCAGGTATAAGGTGGACTCTTTCTGGATGTTGTAGTT--CGACAGCATGCGGCCA 10712836 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 | || ||||||||||| ||| | || || | ||||||||| || ||||| |||| || Sbjct 10712837 CCCTCCAGCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGGTGGAATGCCTTTCTTA 10712896 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| || || ||| ||| ||| | || |||| || || || || | ||| | | Sbjct 10712897 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATG 10712956 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||||| |||| || || || || || ||||| || Sbjct 10712957 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATGTT 10712994 >seq83 Length=9922814 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 64262 ATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGC 64321 ||||||||||| | || |||| | ||||| ||||||||||| ||| | ||||| || Sbjct 4819837 ATGTTGTAATCAGAGAGAGTGCAGACATCTTCCAGCTGCTTGCCCGCAAAGATGAGTTGC 4819778 Query 64322 TGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTA 64381 |||||| ||| | | || || || | || || || ||| ||| || | || Sbjct 4819777 TGCTGGGGGGGGTGGGTGCCCTCCTTAGCCTGGATCTTGGCCTTCACATTCTGGATGGTG 4819718 Query 64382 TCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGC 64441 |||| || ||||| || | || | |||||||||||||| || || ||||| |||||| Sbjct 4819717 TCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGC 4819658 Query 64442 ATTTT 64446 | ||| Sbjct 4819657 AGTTT 4819653 >seq44 Length=14409287 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || || | | || ||||| || | |||||| |||| | |||||| || || Sbjct 3701608 AAGCACCAGGTGCAAGGAGGACTCTTTCTGGACGTTGTAGTCTGACAGGGTGCGGGCATC 3701667 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| ||| | || || | ||||| ||| || ||||| ||||| || | Sbjct 3701668 CTCCAGCTGCTTGCCAGCAAATATCAGTCTCTGCTTGTCAGGTGGAATGCCTTCCTTATT 3701727 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| ||| || | || |||| || | || || | | | | || Sbjct 3701728 TTGGATCTTGGCCTTGACATTCTTGATGGTGTCACTGGGCTGGACCTCAAGATTGATGGC 3701787 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| ||| || || || || || ||||| || Sbjct 3701788 CTTGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 3701823 >seq1 Length=79790405 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/200 (70%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| | | |||||||||| | | |||| | ||||| ||||||||||| Sbjct 51916191 GTAGACTCTTTCTTAGTGTTGTAATCAGAAAGAATGCGACCATCTTCCAGCTGCTTGCCT 51916250 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | |||| || ||||||||| || || || | ||||| || || || || ||| Sbjct 51916251 GCAAAGATGAACCTCTGCTGGTCAGGGGGTATGTCCTCTTTATCCTGGATCTTGGCCTTC 51916310 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || || || |||| || | ||||||| | ||| | Sbjct 51916311 ACATTCTCAATGGTGTCACTGGGCTCTACCTCTAGGGTGATTGTCTTGCGGATCAGGATC 51916370 Query 64427 TTTACGAAAATTTGCATTTT 64446 || | | ||||||||||| Sbjct 51916371 TTCATG---ATTTGCATTTT 51916387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499510620388960