Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq11 118 1e-21 seq88 96.9 3e-15 >seq11 Length=24937227 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| || || |||||||| | ||||| ||| || ||||| || || Sbjct 14395195 GTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 14395254 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||| ||||| || ||||||||||| ||| ||| || |||| Sbjct 14395255 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 14395314 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| |||||| | ||| || || | ||| | || ||||||||||| || Sbjct 14395315 ACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 14395374 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 14395375 TTCACGAAGATCTGCATG 14395392 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 |||| | ||||||||| ||||| || ||||||||||| ||| ||| || ||||| | Sbjct 14396126 AGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGT 14396185 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 ||||| |||||| | ||| || || | ||| | || |||||||||||||| || | Sbjct 14396186 TTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGAGTCTTCA 14396245 Query 127101 CAAAAATCTGCAT 127113 | || || ||||| Sbjct 14396246 CGAAGATTTGCAT 14396258 >seq88 Length=9234670 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || |||||| | || | || ||||| ||||| || ||||| || | Sbjct 4564056 CCACCACGAAGTCTCAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 4564115 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || |||| || ||||| |||||| | |||||| || ||||| Sbjct 4564116 AACGTGCGGCCATCTTCCAGCTTCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 4564175 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| ||| ||| || ||| | | ||| | ||||||| || || Sbjct 4564176 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 4564235 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | ||||| || || || || || || |||||||||||| Sbjct 4564236 TCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATG 4564283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475373104260160