Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq40 145 1e-29 seq123 86.0 9e-12 >seq40 Length=17264671 Score = 145 bits (160), Expect = 1e-29 Identities = 209/293 (71%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 |||||| ||||||||||| ||||| || ||||| || ||||| | |||||||| || ||| Sbjct 16702507 CCGACCAGCAATCTGTCTGGTGAATGACTCAACAAACTGGGCGAGTCCGTGCTCGAGGAG 16702448 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 ||||| |||||||| | ||| |||| | | |||| | ||| | || |||| Sbjct 16702447 AATGGAGTTGTTGTAGAGGAACTGTTTGAAGTTGTACTCCTGGTCCTCGATTTGAAAGGT 16702388 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 || |||| || | |||||| | || || || ||||| || || || || |||||||| Sbjct 16702387 GTCGGGCAGCAAGGGGTGCCAGTGATACAGTGTGTTGAATTCAGCTGCAATGCGGTTCTG 16702328 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||||| || | ||| ||| || | ||||||||| || | || | ||||||||| Sbjct 16702327 ATACTGGAACTGCTGGT--TGAAAAGCAGCTCCGGGTCGAACTTGAGTTTGAAGTGGTAG 16702270 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 ||||| || ||||| ||||| | | ||| | || || || || || || || Sbjct 16702269 CCGCTCAGGTGCTGCACATAGTCTTCGATCACGATCTTGATAGTCTCTCCTGT 16702217 Score = 145 bits (160), Expect = 1e-29 Identities = 206/290 (71%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || || || ||||| || || ||| ||||| |||||||| || || || || | ||| Sbjct 16703577 AAAGGGCAGCCCTTAACGTTATTACAGATGAGAGACTGAATTGTGGCAGTGTTGATGATC 16703518 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || || ||||| || ||||||||| || || |||||| Sbjct 16703517 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGAGGAGAACAGATGGGA 16703458 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || || || | ||| |||| || ||| Sbjct 16703457 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 16703398 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | ||||| || ||||| || | | | ||| || || || | || || | | Sbjct 16703397 ATAGCATCTGGACGAGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCAATG 16703338 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAAG 9180 || | |||||||||| |||||| || || || || |||| |||| ||| Sbjct 16703337 TCACTGTAGAGGGCTTTCAACTCTGCGGCCATTTCTGTCTCTCCTAGAAG 16703288 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| ||||| | |||||||| | ||| ||| | || Sbjct 16700679 TCTTACCCCATGGCCCAGTCCTCGGGTGAAGCCAGGTCCTCGTTTCTGATCTGTCTTGAA 16700620 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || |||||||| || | || || || ||||||| || ||||| |||||||| Sbjct 16700619 AAACTGATGAGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTCGTGCCTTGGGGATC 16700560 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | |||| | || |||||| |||| || | | | ||||| || || Sbjct 16700559 AGGGATGAACTTTCTCCTGAGAAGAACTTTTTCCAGAACTTCTTTCGAATCAGGAAG 16700503 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| ||||||||| || || ||||| || ||| ||| Sbjct 16699962 TCACCTTTCACACCCAAGGGAGTTGGGCAGTCATCAGCCACAGGAGGAAGGACTCTGGTA 16699903 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || || || ||||||||| | ||||| ||||| | || ||||| Sbjct 16699902 TAGTAGGAGAGGTTGGAGAAAGCTTCCCAGTTTTTGTAACCATAGTGTACATTGTAAGTT 16699843 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | || |||||| Sbjct 16699842 GGTGGACTGTCAATCAAATGTGATCTGGCT 16699813 >seq123 Length=6821335 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 9568 TGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAAGGCGGTA 9627 |||||| | ||||| |||||||| | || || ||||| |||||||| || | Sbjct 5369318 TGCCAGTGATAGAGATGGTTGAACTCCACAGCGATGCGGTTGTGGTACTGGAACTGAGCT 5369377 Query 9628 CCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACA 9687 | |||||| | |||||||||||| | ||||| | | ||| || || | ||||| ||| Sbjct 5369378 CGGAACAGCAGCTCCGGGTCAAACTTGAGCTGCAGGAAGTAGCCACTCAAGTGCTGCACA 5369437 Query 9688 TACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 |||| ||| ||||| || ||||||||||| || Sbjct 5369438 TACTCCTCGATGATAATCTTGATGGTTTCCCCTGT 5369472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723533642845600