Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq88 159 8e-34 seq11 129 1e-24 seq29 95.1 3e-14 seq23 93.3 1e-13 seq31 91.5 3e-13 seq83 87.8 4e-12 seq4288 86.0 1e-11 seq241 84.2 5e-11 >seq88 Length=9234670 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| |||||||| || || ||||||||||||| ||||||||||| ||| || Sbjct 4564062 CGAAGTCTCAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAACGTG 4564121 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||| ||| || || ||||| || | ||||||||| ||| ||||||| Sbjct 4564122 CGGCCATCTTCCAGCTTCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCT 4564181 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| | ||||| | | ||| || || | | Sbjct 4564182 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGC 4564241 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||| || || ||||| ||||| || Sbjct 4564242 GTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTG 4564279 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||| || || ||| || |||||||||| | || ||| | || |||||| |||| Sbjct 4564156 CTGATCTTTGCTGGTAAGAAGCTGGAAGATGGCCGCACGTTGTCTGACTACAACATCCAA 4564097 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || ||||| || ||||||||||| ||||||||||| Sbjct 4564096 AAGGAGTCCACCCTTCACCTTGTGTTGAGACTTCG 4564062 >seq11 Length=24937227 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||||| || |||| |||||| |||| | ||| | |||||| Sbjct 14395180 AGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 14395239 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| ||||||||||| || || || || ||| Sbjct 14395240 TCCAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCC 14395299 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| ||||| |||||| | | || || |||| ||||| ||| Sbjct 14395300 TGGATCTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 14395359 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 14395360 TTGCCGGTCAGGGTCTTCACGAAGATCTG 14395388 >seq29 Length=19544038 Score = 95.1 bits (104), Expect = 3e-14 Identities = 101/133 (76%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 199413 GTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTC 199472 |||||| |||||| | || || ||||||||||||| | |||||||| |||| | | Sbjct 9852164 GTCTCAACACAAGGGGAAGGGTGGACTCCTTTTGGATGCTGTAGTCA----AAGTACGGC 9852219 Query 199473 CATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTC 199532 ||||||||||||||| || || ||||| || | |||||| || ||| ||| ||||| Sbjct 9852220 CATCTTCCAGCTGCTGACCAGCAAAGATCAGCCTCTGCTGCTCAGGAGGAATCCCTTCCT 9852279 Query 199533 GCTCCTGAATCTT 199545 ||||| ||||| Sbjct 9852280 TATCCTGGATCTT 9852292 >seq23 Length=21526299 Score = 93.3 bits (102), Expect = 1e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||||||||||| ||| || | ||||||||||||||||| || || |||| Sbjct 1593001 CCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGA 1592942 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || | ||||||||| ||| ||||||| Sbjct 1592941 TCAGCCTCTGCTGGTCAGGAGGAATTCCT 1592913 >seq31 Length=19353835 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||| | || || ||||||||||| | | ||||||||| |||||| |||||||| Sbjct 14184603 ACAAGACGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTATGGCCATCTTCT 14184662 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 || ||||| || || ||||| |||| |||||| || ||| |||||| ||| Sbjct 14184663 AGTTGCTTACCAGCAAAGATCAGACTCTGCTGATCAGGAGAAATTCTTTC 14184712 >seq83 Length=9922814 Score = 87.8 bits (96), Expect = 4e-12 Identities = 148/211 (70%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || |||| || ||| |||||| |||| | ||| | ||||| Sbjct 4819866 AGGACCAGGTGCAG-GTAGACTGTTTCAGGATGTTGTAATCAGAGAGAGTGCAGACATCT 4819808 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| |||||||| || | || || || Sbjct 4819807 TCCAGCTGCTTGCCCGCAAAGATGAGTTGCTGCTGGGGGGGGTGGGTGCCCTCCTTAGCC 4819748 Query 199538 TGAATCTTTTGCTTCACGGATTC--GACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 || ||||| |||||| |||| || |||||| | | || || |||| ||||| | Sbjct 4819747 TGGATCTTGGCCTTCAC--ATTCTGGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 4819690 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || || || ||||| || ||||| Sbjct 4819689 TCTTGCCGGTCAGGGTCTTCACGAAGATTTG 4819659 >seq4288 Length=7725 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| |||||||| || || | ||||||||||| ||||||||||| ||| || | || Sbjct 7487 TCTCATCACAAGGTGAAGGGTGGGCTCCTTTTGGATGTTGTAGTCAGACAACGTGCAGCC 7428 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAG 199503 ||||||||||||||| || || || || || Sbjct 7427 ATCTTCCAGCTGCTTACCAGCAAATATCAG 7398 >seq241 Length=1258670 Score = 84.2 bits (92), Expect = 5e-11 Identities = 117/163 (72%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| || | ||||||| || || | ||||| |||| ||||||||||| ||| Sbjct 25800 CGAAGACTAAACGCAAGGTGAAG-GTGGGCTCCTCTTGGCTGTTGTAGTCAGACAACTCA 25858 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| |||||||||||||||| || |||| || | ||||||||| ||| ||||||| Sbjct 25859 CGCCCAACTTCCAGCTGCTTTCCAGCAAAGACCAGCCTCTGCTGGTCAGGAGGAATTCCT 25918 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571 | |||| ||||| ||| || ||| | ||||||| Sbjct 25919 GCCTTAGCCTGGATCTTGGCCTTTACACTTTCTATAGTGTCTG 25961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178597085619428