Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq11 131 2e-25 seq34 100 3e-16 seq15 98.7 1e-15 seq86 91.5 2e-13 seq88 89.7 6e-13 seq44 89.7 6e-13 seq83 87.8 2e-12 >seq11 Length=24937227 Score = 131 bits (144), Expect = 2e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 |||| | ||| || || | || | ||||| |||| ||| ||| || ||||| |||| Sbjct 14395157 ATTAATAGCCACCCCTGAGGCGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGT 14395216 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 | || || |||||||| | || || ||||||||||| || || || | |||||||||| Sbjct 14395217 AATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGT 14395276 Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCG 46538 ||| || | || |||||| ||| |||||| ||||| | | | ||||| || | Sbjct 14395277 CGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTTTCGATGGTGTCACTGG 14395336 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 14395337 GCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 14395391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528 ||||||||||||| || | || |||||| ||| |||||| ||||| | | | Sbjct 14396134 CGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTTTCGATG 14396193 Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588 ||||| || | ||||| || | |||||||| ||||| ||||| || || || |||||| Sbjct 14396194 GTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATT 14396253 Query 46589 TGCATTTTG 46597 ||||||||| Sbjct 14396254 TGCATTTTG 14396262 >seq34 Length=19385306 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | |||||||||||| || ||| || ||||| |||||||| | Sbjct 7139875 TGCCCCCGCGAAGACGAAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCG 7139816 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || | | || || | ||||||||| || ||||||| | ||||||||| | | Sbjct 7139815 ACAGGGTTTGGCCATCCTCCACCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGATG 7139756 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||| | |||||| ||||| || | | ||||| || | || | Sbjct 7139755 GAATGCCTTCCTTATATTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGA 7139696 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || | |||||||| |||||| || || || |||||||| ||||| ||| Sbjct 7139695 ACTCAAGAGTGATGGTCTTGCCCAACAAGGTCTTCACAAAGATCTGCATGTTG 7139643 >seq15 Length=24491037 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| | || || ||| || ||||| ||||||| || || |||| | | || Sbjct 10712782 CACCAGGTATAAGGTGGACTCTTTCTGGATGTTGTAGTTCGACAGCATGCGGCCACCCTC 10712841 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| || ||||||| | ||||||||| | || | || | ||| || Sbjct 10712842 CAGCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGGTGGAATGCCTTTCTTATCTTG 10712901 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| || | | ||||| || | || || || | |||||||| || Sbjct 10712902 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 10712961 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| ||||| || || |||||||| ||||| ||| Sbjct 10712962 GCCTGTCAGGGTCTTCACAAAGATCTGCATGTTG 10712995 >seq86 Length=10151807 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| || ||| | ||||| |||| || || ||||||| || || || Sbjct 3693144 ACCAGGTGCAGGGTGAACTCTTCCTGGATGCTGTAATCAGAAAGAGTGCAGTCATCTTCC 3693203 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||||||||| || || | |||| ||| ||| || | || ||| || ||| | Sbjct 3693204 AGTTGCTTGCCGGCAAAGATGAGTTGCTGTTGGAGGGCGGGGATGCCCTCTTTATCCTGG 3693263 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| | ||| || | ||||| || | |||||| || | |||||||| ||| Sbjct 3693264 ATCTTGACCCTGACATTCTGAATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTCTTG 3693323 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||| ||||| | || |||||| |||| Sbjct 3693324 CCGGTCAGGGTTTTTATTAAAATTTGCCATTTG 3693356 >seq88 Length=9234670 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||| || || | || |||||||||||| |||||||| || | ||||| | || Sbjct 4564070 CAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCATC 4564129 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || |||| ||| || || || |||| | ||||||||| | || | | ||||| || Sbjct 4564130 TTCCAGCTTCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTATC 4564189 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | |||||| ||| | | | | ||||| | ||| || || | ||||||||| Sbjct 4564190 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 4564249 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| ||||| || || || || || || ||||| ||| Sbjct 4564250 TTTCCCCGTAAGGGTCTTCACGAAAATCTGCATGTTG 4564286 >seq44 Length=14409287 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| ||||| | ||| || |||| |||||||| || || ||||| | || || Sbjct 3701611 CACCAGGTGCAAGGAGGACTCTTTCTGGACGTTGTAGTCTGACAGGGTGCGGGCATCCTC 3701670 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| || ||||||| | ||||| ||| | || | || ||||| | Sbjct 3701671 CAGCTGCTTGCCAGCAAATATCAGTCTCTGCTTGTCAGGTGGAATGCCTTCCTTATTTTG 3701730 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| || | ||||| || | | || || | |||||| || Sbjct 3701731 GATCTTGGCCTTGACATTCTTGATGGTGTCACTGGGCTGGACCTCAAGATTGATGGCCTT 3701790 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||| || || |||||||| ||||| ||| Sbjct 3701791 GCCCATCAGGGTCTTCACAAAGATCTGCATGTTG 3701824 >seq83 Length=9922814 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| ||| || || |||| ||||| || || ||||||| | || || Sbjct 4819863 ACCAGGTGCAG-GTAGACTGTTTCAGGATGTTGTAATCAGAGAGAGTGCAGACATCTTCC 4819805 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || || | |||||||| || | || |||||| || | Sbjct 4819804 AGCTGCTTGCCCGCAAAGATGAGTTGCTGCTGGGGGGGGTGGGTGCCCTCCTTAGCCTGG 4819745 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | || | ||||| || | ||||| |||| |||||||| ||| Sbjct 4819744 ATCTTGGCCTTCACATTCTGGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 4819685 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||| || || || |||||||||| |||| Sbjct 4819684 CCGGTCAGGGTCTTCACGAAGATTTGCAGTTTG 4819652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565086605227680