Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq11 118 1e-21 seq35 96.9 3e-15 seq88 93.3 4e-14 >seq11 Length=24937227 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 14395391 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 14395332 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || |||| || || ||||| || ||| ||||||| Sbjct 14395331 GACACCATCGAAAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCA 14395273 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| |||||||| || | ||||| || || ||||| Sbjct 14395272 GCAGCGACTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 14395213 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || ||||| |||| || || | || || ||| Sbjct 14395212 CATCCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGCCTCAGGGGTGGC 14395164 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 14396261 AAAATGCAAATCTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCC 14396202 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | ||||| | || | || |||| || || ||||| || ||| |||| Sbjct 14396201 AGTGACACCATCGAAAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGA 14396143 Query 38360 CCAACAGCGGCTCAT 38374 ||| ||||| ||||| Sbjct 14396142 CCAGCAGCGACTCAT 14396128 >seq35 Length=17774785 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||||||| ||||| ||||| |||||| | || ||||||||||| | || | Sbjct 13464922 CCTCGTCCCTGCTGATGAGCTCGTTTGAGAAAGTGAGTCCTGGCATGAGGCCTCTCTTCT 13464863 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| ||||| ||||| || ||||| ||||||||||| || ||||| ||||| | Sbjct 13464862 TCAGCCAGAATATAGCGGCAAACGACCCCGAGAAGAAGACGCCTTCTACGGCAGCGAAGG 13464803 Query 133037 CCACCA 133042 | |||| Sbjct 13464802 CTACCA 13464797 >seq88 Length=9234670 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || ||||| ||||||||||| |||| || || || Sbjct 4564285 AACATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCC 4564226 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | ||| | || | || |||| || || || |||||||| | ||| Sbjct 4564225 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 4564166 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || || || ||||||| || | ||||| | |||||| Sbjct 4564165 CAGCAGAGGCTGATCTTTGCTGGTAAGAAGCTGGAAGATGGCCGCACGTTGTCTGACTAC 4564106 Query 38421 AACATCCAAAAGGA 38434 |||||||||||||| Sbjct 4564105 AACATCCAAAAGGA 4564092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500038478594560