Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq22 165 3e-35 seq19 107 8e-18 seq2 107 8e-18 seq123 91.5 6e-13 seq88 91.5 6e-13 seq183 86.0 2e-11 seq10 86.0 2e-11 seq3 84.2 9e-11 >seq22 Length=22071668 Score = 165 bits (182), Expect = 3e-35 Identities = 464/701 (66%), Gaps = 20/701 (3%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||||||||||| ||||||| ||| ||||| ||||| | ||| |||| || Sbjct 21657173 GCAGTTGGTATTGATCTTGGCACCACCTATTCCTGTGTGGGTGTCTTCCAGCATGGGAAG 21657232 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || || | | || |||||||| || | ||||| || || | || ||| || Sbjct 21657233 GTGGAGCTAACTGCCAATGACCAGGGTACCCGAACCACACCAAGTTATGTTGCTTTCACT 21657292 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTA--AATTCAAATGCCAA 451089 || ||||| || | | || | ||||| || |||| ||| ||| || ||| Sbjct 21657293 GACACAGAACGATTAATTGGAGATGCTGCAAAGAATCA--GGTTGCAATG--AACCCCAC 21657348 Query 451090 AAACACAGTATATG---ATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGT 451146 |||||||| | | |||| ||| | | | | ||| || ||| |||| ||| Sbjct 21657349 CAACACAGTTTTTTTTAATGCCAAATGGCTGCTCAGAAGTAGGTTTGACGATGCCGTTGT 21657408 Query 451147 ACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATAT 451206 || || | || || | | | || || ||| | ||| | |||| | | Sbjct 21657409 TCAGTCTGATATGAAGCACTGGCCCTTCGTGGTGGTGAATGATGCAGGCAGGCCCAAGGT 21657468 Query 451207 TCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGT 451266 |||||| | |||||||| || | || | ||| || || || | || |||||||| Sbjct 21657469 CCAAGTAGAGTATAAAGGAGAGGCAAACAGTTTCTACCCAGAGGAGGTGTCCTCTATGGT 21657528 Query 451267 TCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGT 451326 ||| || |||||||| |||| |||||| ||| | | ||||| |||| || Sbjct 21657529 TCTGACCAAAATGAAGGAAATTGCAGAAGCCTATCTCAGAAAGATTGTTACCAATGCTGT 21657588 Query 451327 AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACA 451386 | | ||||| || || || ||||||||| | || | | ||||| |||||||| ||| Sbjct 21657589 AGTCACTGTGCCGGCCTACTTCAATGATTCTCAGCAATAGGCAACAAAAGATGCTGGAAC 21657648 Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATA 451446 ||||||||| | ||||| ||||||||||| |||||||| || || |||||| | || || Sbjct 21657649 TATTGCTGGCCTCAATGTGCTTCGAATTATCAATGAACCAACTGCTGCTGCTATTGCTTA 21657708 Query 451447 TGGACTAGGAAAATCAAAAG-AAACAGAAGaaaaaaaTATT-TTAGTATTTGATTTTGGT 451504 ||| |||| || | ||| || |||| ||| || | ||| ||||| |||| Sbjct 21657709 TGGGCTAG----ATAAGAAGTTTGGAGCTGAAAGGAATGTTCTCAGT-TTTGA-CTTGGA 21657762 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCA 451564 || || ||| |||| || | || | ||||| ||| || ||||||||| || || Sbjct 21657763 GGTGGTACTTTTGATGGGTCAATCCTCACTATTGAGGAT-GGAAATTTGAAGTTAAATCA 21657821 Query 451565 ACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||| || || || | || || |||||| ||||||| Sbjct 21657822 ACAGCTGGAGACACCCACTTGGGTGGAGAAGATTTTGATAA 21657862 Score = 113 bits (124), Expect = 2e-19 Identities = 393/604 (65%), Gaps = 22/604 (4%) Strand=Plus/Plus Query 451896 ATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTT 451955 |||| ||||| || || || |||||||| |||| || || ||||| | | || Sbjct 21668438 ATGACATTGTCCTGGTGGGTGGTTCTACCAGAATCCCCAAGATTCAGAAGCTTCTGCAGG 21668497 Query 451956 -CTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATAT 452014 ||| || |||||| |||| |||||| | || |||||||||||| |||| ||| Sbjct 21668498 ACTTCTTCAACAGGAAAT-AACTGAACAAGAGCATTAAGCCTGATGAAGCTATTGCTTAT 21668556 Query 452015 GGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATT 452074 ||||| || ||||| | ||| |||||| | ||| | ||| || | ||| | Sbjct 21668557 GGTGCAGCTGTTCAGGTAGCCATTCTATCTGGTGACAAGTCTGAGAATGTTCAGGATTTG 21668616 Query 452075 CTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACT 452134 ||| | | ||||| || ||||| || ||||| ||||||| ||||||||| | ||||| Sbjct 21668617 CTGCTGTTGGATGTCACTCCTCTTTCCCTTGGTATTGAAACTGCTGGTGGAGTCATGACA 21668676 Query 452135 AATTTAATTAAACGAGGAA---CTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACA 452191 | || || ||| || | || |||||| ||| ||| || || || | |||| Sbjct 21668677 GGCCTCATCAA--GAGCAATACCATC-ATTCCTACTAAGCAGACACAGACTTTCACTACA 21668733 Query 452192 GCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACA 452251 ||| || || || ||||| ||||| || | |||||| ||| | || ||||| Sbjct 21668734 TATTCTGACAATCAGCCCGGTGTGCTCATTCAGGTCTATGAAGGTGAAAGCGCCATGACC 21668793 Query 452252 CGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTC---CTATGCCAAGG 452308 ||||| || || ||| | ||| ||| | ||| |||| | || | Sbjct 21668794 AAGGATAACAACCTGCTTGGAAAGTTTGAACTTATAGGCATCCCTCCAGCAGCACCCCGT 21668853 Query 452309 GGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGT 452368 || |||||| |||||| | || | ||| ||||||| ||||| || || ||||| | Sbjct 21668854 GGTGTTCCTCAGATTGAAGTCACTTTTGACATTGATGCCAATGGCATCCTCAATGTCTCT 21668913 Query 452369 GCAGTTGA-AAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACC 452426 || || || || | || || || |||| || || || || || ||||| || || Sbjct 21668914 GCTGTAGATAAGAGCA--CGGGCAAGGAGAACAAGATCACTATCACCAATGACAAGGGCC 21668971 Query 452427 GTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATG 452486 | || || | ||||||| ||||| | ||||| || || | ||| | ||| | Sbjct 21668972 GCTT-------GAGGTTATTGAACCCATGGTCCAGGAAGCTGAGAAGTACAAAGCTGAAG 21669024 Query 452487 ATGA 452490 | || Sbjct 21669025 ACGA 21669028 >seq19 Length=22253760 Score = 107 bits (118), Expect = 8e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||| || | || || || || || ||||||||| | || || || ||||| Sbjct 3248296 GTTACCAATGCTGTGGTCACCGTGCCGGCCTACTTCAATGATTCTCAGCGACAGGCAACA 3248355 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| || ||||||||| | ||||| ||||||||||| |||||||| || || Sbjct 3248356 AAAGATGCTGGGACTATTGCTGGCCTCAATGTGCTTCGAATTATCAATGAACCAACTGCT 3248415 Query 451433 GCTGCTCTAGCATATGGACTAG 451454 |||||| | || ||||| |||| Sbjct 3248416 GCTGCTATTGCTTATGGGCTAG 3248437 >seq2 Length=60928133 Score = 107 bits (118), Expect = 8e-18 Identities = 333/505 (66%), Gaps = 14/505 (3%) Strand=Plus/Plus Query 451982 AAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTA 452041 |||||| | || ||||||||||||||||| |||||||| || ||||| ||||| |||||| Sbjct 56429086 AAGAGCATTAACCCTGATGAAGCTGTTGCTTATGGTGCAGCTGTTCAGGCAGCCATTCTA 56429145 Query 452042 ACAGGTTCAGATGA---TGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTA 452098 | || ||| | ||| || | ||| ||||| | | ||| | || | ||| Sbjct 56429146 TCTGG---AGACAAGTCTGATAATGTTCAGGATTTTCTGCTGTTGGATATCACTCTTCTT 56429202 Query 452099 TCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAA--ACGAGGAACTT 452156 || ||||| ||||||| ||||||| | ||||| | | || || |||| | | | Sbjct 56429203 TCCCTTGGTATTGAAACTGCTGGTGCTGTCATGACCATCCTTATCAAGCACGA-TACCAT 56429261 Query 452157 CTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAA 452216 | || ||| ||| ||| || ||||| | || ||| || || || ||||| Sbjct 56429262 C-ATCCCTACTAAGCAGACACAGACATTCACTATCTACTTTGACAATCAGCCTGGTGTGG 56429320 Query 452217 CTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAAT 452276 |||| || | |||||| || | || || || ||||| || ||| ||| | | Sbjct 56429321 TCATTCTTGTTTATGAAGGTCAAAGGGCCATAACCAAGGATAACAACCTACTTGGAAAGT 56429380 Query 452277 TTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATG 452336 || ||| || || ||||| || | || |||||| |||||| | | | || Sbjct 56429381 TTGAACTTACAGGCACCCCTCCAGAACCCTGTGGTGTTCCTCAGATTGAAGTCATTTTTG 56429440 Query 452337 ATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGA-AAAATCATCTGGAAAATCA 452395 | ||||||| ||||| || || ||||| ||| || || || | || | || || | Sbjct 56429441 ACATTGATGCCAATGGCATCCTCAATGTCTCTGCTGTAGATAAGAGCA-CAGG-CAAGGA 56429498 Query 452396 GAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAAT 452454 ||| || || || ||||| ||||| ||| || || || || ||||||||| | || Sbjct 56429499 GAACAAGATCACCATTACCAATGACAAAGGCCACTTGAGCAAGGAGGATATTGAACATAT 56429558 Query 452455 GGTAGATGAAGCAGAAAAATTCAAG 452479 ||| | ||| | || || | |||| Sbjct 56429559 GGTCCAGGAACCTGAGAAGTACAAG 56429583 >seq123 Length=6821335 Score = 91.5 bits (100), Expect = 6e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| |||||||| ||||| ||||| || ||||||||||| Sbjct 1379655 GTTACCCATGCAGTTGTTACTGTACCCGCTTACTTCAACGATGCCCAGCGGCAAGCAACC 1379714 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| || |||||||| | ||||| | || || || ||||| || Sbjct 1379715 AAAGATGCTGGCACCATTGCTGGACTGAATGTCATGCGGATCATCAATGAGCC 1379767 >seq88 Length=9234670 Score = 91.5 bits (100), Expect = 6e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || || ||||| || || || || |||||| | || Sbjct 4564282 ATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 4564223 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || || || || ||||||||||||||||||||||| || Sbjct 4564222 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 4564163 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || || | || |||||||| | || ||| | || || || Sbjct 4564162 CAGAGGCTGATCTTTGCTGGTAAGAAGCTGGAAGATGGCCGCACGTTGTCTGACTACAAC 4564103 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 || | ||||| | || |||||| | || || ||||| Sbjct 4564102 ATCCAAAAGGAGTCCACCCTTCACCTTGTGTTGAGACT 4564065 >seq183 Length=3225409 Score = 86.0 bits (94), Expect = 2e-11 Identities = 167/245 (68%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | ||||||||||| || || || ||||| ||| || | || | || | Sbjct 618139 TGCAATCTCTGGCACTAGGGAGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 618082 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || || | | ||| |||||| | | Sbjct 618081 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCGCTGTGATCTTAGAATATCAAGA 618022 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | ||||||||||||||||||| ||| ||||| || ||| Sbjct 618021 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 617962 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || |||||| ||||||| ||| || |||||| ||||| | | Sbjct 617961 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATAATCAAAAAGAATACACCACCTTGA 617902 Query 96287 TAGGG 96291 || || Sbjct 617901 TATGG 617897 >seq10 Length=26256861 Score = 86.0 bits (94), Expect = 2e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 127420 TATGCTTCCGAAATTTCTTTAAATTTTTGTTCAGCTTCTTGTTTGTTATTTTGATTCTTA 127479 ||||| || | | |||||| |||||| | || ||||| | |||||| | | |||| ||| Sbjct 3676900 TATGCCTCAGCGACTTCTTTGAATTTTCGCTCTGCTTCCTCTTTGTTTTCTGGATTTTTA 3676959 Query 127480 TCAGGATGATGTTTAACAGCTAATTTACGGTAAGCTTTTTTAATTTC 127526 |||||||| ||||| || | ||||||||||||| ||||||| || Sbjct 3676960 TCAGGATGCCATTTAAGTGCCACTTTACGGTAAGCTCTTTTAATGTC 3677006 >seq3 Length=44330745 Score = 84.2 bits (92), Expect = 9e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||| ||||| || || || |||| ||||||| |||||| | |||||||||||| Sbjct 1649446 GCTACTAAGGATGCTGGGCAGATATCTGGGCTAAATGTGCTTCGAGTGATTAATGAACCT 1649505 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| ||||| || || ||||| || | ||||| |||| Sbjct 1649506 ACAGCTGCTGCCCTGGCCTATGGTCTGGACAAATCTGAAGA 1649546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975174556344272