Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq259 100 2e-16 seq234 95.1 1e-14 seq285 91.5 1e-13 seq255 86.0 5e-12 >seq259 Length=986218 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | |||||||| || ||| | ||||| | || ||| || | | |||| Sbjct 633112 CCTCATGCTGCACATGACATGTGTATCTCTGCTCCTCTCCTGAAGGCACCACCACAGCTG 633171 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || |||||||| || | | ||| | | | Sbjct 633172 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCTATAAGATCCATGTCCTGGG 633231 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| || || | ||||| || | ||| ||||| |||||||||||||| || Sbjct 633232 TCAGGTCCTCCTCTTCCCTCTGCCAGGTCAGGGTGATGTCTGCAGGATAGAAGCCCAGGG 633291 Query 529 CCCAACATTT 538 |||| || || Sbjct 633292 CCCAGCACTT 633301 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| || ||| |||| || ||| | | ||||| | ||| || | | |||| Sbjct 590281 CCTCATGATTCACAAGACATGTGTATCTCTCCTCTTCTCCAGAAGGCACCACCACAGCTG 590340 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| || || ||||| |||| | | ||| | | || Sbjct 590341 CCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTGTCCATCACCTCCATGTCCTGAG 590400 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 || | | || | || | ||||| || | ||| ||||| || || ||||| ||| || Sbjct 590401 TCTGGTCTTCCCCATCCCTCTGCCAGGTCAGGGTGATGTCAGCTGGGTAGAATCCAAAGG 590460 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGTG 588 |||| || | || || || | || |||||| | | || |||||| || ||| || Sbjct 590461 CCCAGCACCTCAGGGTGACATCACCTTCAGGTCTAGGGTGATGGGTCACATGGGCCTTTG 590520 Query 589 GAG 591 ||| Sbjct 590521 GAG 590523 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 405 GCTGCCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCA 464 |||||||||||||| || |||||||| || || |||||||| |||||| ||| | Sbjct 7823 GCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCCACCATTTCCATGTCC 7882 Query 465 TCAGTCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524 | |||| || |||||| | | | ||| || | ||| ||||| ||||| ||||| || Sbjct 7883 TGGGTCACTTCCTCTGCATCTTTCTTCCAAGTCAGGGTGATGTCAGCAGGGTAGAATCCC 7942 Query 525 GTGGCCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACC 584 |||||| || | || || || | || |||||| | | || |||||| || || Sbjct 7943 AGGGCCCAGCACCTCAGGGTGACATTACCTTCAGGTCTGGGGTGAAGGGTCACATGTGCC 8002 Query 585 TGTGGAG 591 | ||||| Sbjct 8003 TTTGGAG 8009 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||| |||| || ||| | ||||| | | ||| || | | |||| Sbjct 224666 CCTCATGATCCACACGACATGTGTATCTCTGCTCCTCCCCAGGAGGCACCACCACAGCTG 224607 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| || || ||||| |||| | | |||| | | | Sbjct 224606 CCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTGTCCATCACCTCCACGTCCTGTG 224547 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAG-CCAGTG 527 || | | || | || | ||||| || | ||| ||||| ||||| |||||| |||| | Sbjct 224546 TCTGATTGTCCCCATCCCTCTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAAGTCCAG-G 224488 Query 528 GCCCAACA 535 ||||| || Sbjct 224487 GCCCAGCA 224480 >seq234 Length=1578880 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | |||| ||| || ||||| || || | | ||| ||| | | | || Sbjct 720959 CCTCATGCTGCACAT-ACATGTGTATTTCTGTTCCTCCCCAGAAGGCACTACCAGAGATG 721017 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| |||| |||||||| |||||| || ||| | | || Sbjct 721018 CCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAGCTCCATGTCCTGAG 721077 Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527 || ||| || || ||||| | ||||| || | ||| ||| | ||||| ||||| || | Sbjct 721078 TCTGTTCCTCCTCCTCCC-TCTGCCAGGTCAGGGTGATGACAGCAGGGTAGAAACCCAGG 721136 Query 528 GCCCAACA 535 ||||| || Sbjct 721137 GCCCAGCA 721144 >seq285 Length=628835 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 820 GCGGTCCAGGTCCTGAGATCTTCATTCAAAGAAATGTAGTCCCTGCCATCATAGGCCTGT 879 || ||||| ||||| || || ||||||| | |||||||| |||| || ||||| Sbjct 7502 GCCGTCCACGTCCTCAGGTCCTCATTCAGGGCGATGTAGTCGTTGCCGTCGTAGGCGAAC 7443 Query 880 TGACAGTAGCCTCGAAGGAGGGTTCCATCCGGCCCCACAACACAGCCGGACATCCATTGG 939 |||| ||| || || |||||| || ||||||||||| ||||||| ||||||||||| Sbjct 7442 TGACTGTACCCGCGGAGGAGGCGCCCGTCCGGCCCCACGTGACAGCCGTACATCCATTGG 7383 Query 940 AGGGTATG 947 | ||| || Sbjct 7382 ATGGTGTG 7375 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | ||| || | | | || Sbjct 39049 CCTCATGCTCCACATGGCATGTGTATCTCTGCTCCTCTCCAATAGGCACCACCAGAGATG 38990 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || |||||||||| |||||| | | || | || Sbjct 38989 CCCACTTCTGGAAGGTTCCATCCCCTCCTGGTCTGGTCTCCACCATCTGTATGCCCTGAG 38930 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||||| |||||| || | ||| || | ||| ||||| ||||| ||||| || || Sbjct 38929 TCAGTTCCTCTGCATCCTTCATCCAGGTCAGGGTGATGTCAGCAGGGTAGAATCCCAGGG 38870 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGTG 588 |||| || | || || || | || |||||| | | || |||||| || || || Sbjct 38869 CCCAGCACCTCAGGGTGACATTACCATCAGGTCTGGGGTGATGGGTCACATGTGTCTTTG 38810 Query 589 GAG 591 ||| Sbjct 38809 GAG 38807 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | ||| || || | |||| Sbjct 119561 CCTCATGCTCCACATGGCATGTGTATCTCTGCTCCTCTCCAATAGGCACCTCCACAGCTG 119502 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||| | ||| || |||||||| |||||| | ||| | | | Sbjct 119501 CCCACTTCTGGAAGGTTCCGTTTCCTGCAGGTCTGGTCTCCACCATCTCCATGTCCTGGG 119442 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||||| ||| | || | | ||| || | ||| ||||| ||||| ||||| || || Sbjct 119441 TCAGTTCCTCCTCATCCTTCTTCCAGGTCAGGGTGATGTCAGCAGGGTAGAACCCCAGGG 119382 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGTG 588 |||| || | || || ||| || |||||| | | || |||||| || || || Sbjct 119381 CCCAGCACCTCAGGGTGGCTTTACCATCAGGTCTGGGGTGGTGGGTCACATGCGTCTTTG 119322 Query 589 GAG 591 ||| Sbjct 119321 GAG 119319 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 793 TTAGAAATTTGAGAGGACATGTCTCTAGCGGTCCAGGTCCTGAGATCTTCATTCAAAGAA 852 ||||| || ||||||| || ||| | || ||||||| | || || || || || || Sbjct 88170 TTAGAGATCTGAGAGGCCAGGTCAGTCGCAGTCCAGGAGCGCAGGTCCTCGTTTAAGGAG 88111 Query 853 ATGTAGTCCCTGCCATCATAGGCCTGTTGACAGTAGCCTCGAAGGAGGGTTCCATCCGGC 912 ||||| || ||| || || |||| |||||||| || || || ||| | |||||||| Sbjct 88110 ATGTAATCGTGGCCGTCGTAAGCCTCCTGACAGTACCCGCGGAGCAGGCGTTCATCCGGC 88051 Query 913 CCCACAACACAGCCGGACATCCATTGGAGGGTATGTGG 950 |||| | |||||| ||||||| || || || || || Sbjct 88050 CCCAGGTCGCAGCCGTACATCCACTGCAGCGTGTGCGG 88013 >seq255 Length=1189481 Score = 86.0 bits (94), Expect = 5e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 13087 TGCCTACCTGAGCGACAATGGAATCAGCAGCGCCAGGGAGTATGCAGACAGGAGGTGGAT 13146 ||||||||||| | ||||| |||||||||||||| | |||||||||||||| ||||| Sbjct 979104 TGCCTACCTGAATAAGAATGGCATCAGCAGCGCCAGAGTCTATGCAGACAGGAGATGGAT 979045 Query 13147 ATGCAGCAAGCC 13158 ||||||||||| Sbjct 979044 CTGCAGCAAGCC 979033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397643055364704