Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq88 127 5e-24 seq1 98.7 2e-15 seq15 96.9 8e-15 seq34 89.7 1e-12 >seq88 Length=9234670 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||||||||| |||||||| ||||| || ||||| || | | || | Sbjct 4564065 AGTCTCAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAACGTGCGG 4564124 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| |||| |||||| || ||||| || | || ||||| |||||||| ||||| Sbjct 4564125 CCATCTTCCAGCTTCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCC 4564184 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || |||||||| ||| || || || || Sbjct 4564185 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 4564244 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | || || ||||| | ||||| Sbjct 4564245 ATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 4564282 >seq1 Length=79790405 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||| || || |||||||| | | | |||||||| | |||| | | |||||||| Sbjct 51916179 ACCAGGTACAGGGTAGACTCTTTCTTAGTGTTGTAATCAGAAAGAATGCGACCATCTTCC 51916238 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| | | || ||||| || || ||| | ||||| || || Sbjct 51916239 AGCTGCTTGCCTGCAAAGATGAACCTCTGCTGGTCAGGGGGTATGTCCTCTTTATCCTGG 51916298 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||| || |||||||||||||| Sbjct 51916299 ATCTTGGCCTTCACATTCTCAATGGTGTC 51916327 >seq15 Length=24491037 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||||||||| || || ||||| | | || | | ||| | || |||||||| || Sbjct 10712795 GTGGACTCTTTCTGGATGTTGTAGTTCGACAGCATGCGGCCACCCTCCAGCTGCTTGCCA 10712854 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || |||| || ||||| || |||||||||| || ||||| || || |||| Sbjct 10712855 GCAAATATCAGTCTCTGCTGGTCAGGTGGAATGCCTTTCTTATCTTGGATCTTGGCCTTG 10712914 Query 195064 ACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 || ||||| |||||||| ||| || || ||||| || | ||||| ||||||| Sbjct 10712915 ACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGTCAGG 10712971 Query 195121 GTTTTTACGAACACTTGCAT 195140 || || || || | ||||| Sbjct 10712972 GTCTTCACAAAGATCTGCAT 10712991 >seq34 Length=19385306 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||||||||| || || ||||| || | || ||| ||||| || | |||||| || Sbjct 7139843 GTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTTTGGCCATCCTCCACCTGCTTGCCA 7139784 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || |||| || ||||| | ||||||||||| || | ||| || || |||| Sbjct 7139783 GCAAATATCAGTCTCTGCTGGTCAGATGGAATGCCTTCCTTATATTGGATCTTGGCCTTG 7139724 Query 195064 ACGTTCTCAATGGTGTC 195080 || ||||| |||||||| Sbjct 7139723 ACATTCTCGATGGTGTC 7139707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109176199934228