Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq11 114 8e-21 seq15 96.9 2e-15 seq34 87.8 1e-12 seq33 87.8 1e-12 seq44 82.4 5e-11 >seq11 Length=24937227 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || ||||| | || |||| |||||||| || || ||||| Sbjct 14395201 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 14395260 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| |||||||| | || | |||||||| || ||||| |||||| | Sbjct 14395261 ATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTT 14395320 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || |||||||| Sbjct 14395321 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 14395380 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 14395381 AAGATCTGCAT 14395391 >seq15 Length=24491037 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| |||| ||| || | || || | |||||||| || || |||||| Sbjct 10712801 TCTTTCTGGATGTTGTAGTTCGACAGCATGCGGCCACCCTCCAGCTGCTTGCCAGCAAAT 10712860 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| |||||||| | || | || | ||| || ||||| ||||| || Sbjct 10712861 ATCAGTCTCTGCTGGTCAGGTGGAATGCCTTTCTTATCTTGGATCTTGGCCTTGAC--AT 10712918 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | || ||||| || || || || ||||||| Sbjct 10712919 TCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCA 10712978 Query 34969 CAAAGATCTGCATATT 34984 ||||||||||||| || Sbjct 10712979 CAAAGATCTGCATGTT 10712994 >seq34 Length=19385306 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| |||||||| ||| || | |||| |||| ||| || || |||||| Sbjct 7139837 TCTTTCTGGATGTTGTAGTCCGACAGGGTTTGGCCATCCTCCACCTGCTTGCCAGCAAAT 7139778 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| |||||||| || | || ||||| | ||||| ||||| || Sbjct 7139777 ATCAGTCTCTGCTGGTCAGATGGAATGCCTTCCTTATATTGGATCTTGGCCTTGAC--AT 7139720 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| | || | || ||||| || ||| | ||||||| Sbjct 7139719 TCTCGATGGTGTCACTGGGCTCGAACTCAAGAGTGATGGTCTTGCCCAACAAGGTCTTCA 7139660 Query 34969 CAAAGATCTGCATATT 34984 ||||||||||||| || Sbjct 7139659 CAAAGATCTGCATGTT 7139644 >seq33 Length=18013292 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||| | ||||| |||||| | ||| | | ||||| |||||||| || | ||||||| Sbjct 16639505 TCTTTCGGGATGTTGTAGTCCAACAGGGTGTGGTCATCCTCCAGCTGCTTGCTGGCAAAT 16639446 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| || | | ||||| || ||||| ||||| || Sbjct 16639445 ATCAGCCTCTGCTGGTCAGATGGGATGACTTCCTTATCTTGGATCTTGGTCTTGAC--AT 16639388 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || || |||| || ||| || || | || ||||| || ||| | || ||||||| Sbjct 16639387 TCTCAATAGAGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCA 16639328 Query 34969 CAAAGATCT 34977 ||||||||| Sbjct 16639327 CAAAGATCT 16639319 >seq44 Length=14409287 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| | ||| ||||| || ||| | || |||| |||||||| || || |||||| Sbjct 3701630 TCTTTCTGGACGTTGTAGTCTGACAGGGTGCGGGCATCCTCCAGCTGCTTGCCAGCAAAT 3701689 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| |||| ||| | || | || ||||| | ||||| ||||| || Sbjct 3701690 ATCAGTCTCTGCTTGTCAGGTGGAATGCCTTCCTTATTTTGGATCTTGGCCTTGAC--AT 3701747 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || || || || | | |||| || ||| | || ||||||| Sbjct 3701748 TCTTGATGGTGTCACTGGGCTGGACCTCAAGATTGATGGCCTTGCCCATCAGGGTCTTCA 3701807 Query 34969 CAAAGATCTGCATATT 34984 ||||||||||||| || Sbjct 3701808 CAAAGATCTGCATGTT 3701823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324548599155552