Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq44 96.9 4e-15 seq35 86.0 7e-12 >seq44 Length=14409287 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 13241415 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 13241356 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | || || || |||||||| || |||||||| || |||||||| | | || | | Sbjct 13241355 TTAATGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 13241296 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220 |||| | || ||||| || || ||||| | ||| || | ||| || |||| Sbjct 13241295 TTTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGGGA 13241245 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || |||||||| || | ||||| || | || || ||||| || || ||||| || || Sbjct 13238026 TGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATGGAC 13237967 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 || ||||| || | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 13237966 TCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 13237907 Query 47448 TTTCTTACTCCATA 47461 |||||||| ||||| Sbjct 13237906 TTTCTTACACCATA 13237893 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| |||||| ||||||| ||||| || | || || Sbjct 13226667 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 13226608 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||||||||| ||| ||| ||||| || || || || | |||||| | ||| ||| Sbjct 13226607 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 13226548 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| || ||||||||| Sbjct 13226547 ATATGCTGTGGTCTTTCA 13226530 >seq35 Length=17774785 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| ||||| || |||||||| || |||| Sbjct 13474507 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 13474448 Query 18733 ATAAAATCAAATGGATTTTTTACAT 18757 ||||||||||| ||||||| | ||| Sbjct 13474447 ATAAAATCAAAGGGATTTTCTGCAT 13474423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561957845681760